Cellulomonas palmilytica: F1D97_15350
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Entry
F1D97_15350 CDS
T08423
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpal
Cellulomonas palmilytica
Pathway
cpal03420
Nucleotide excision repair
cpal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F1D97_15350
03430 Mismatch repair
F1D97_15350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpal03400
]
F1D97_15350
Enzymes [BR:
cpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1D97_15350
DNA repair and recombination proteins [BR:
cpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F1D97_15350
MMR (mismatch excision repair)
Other MMR factors
F1D97_15350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UJP39660
LinkDB
All DBs
Position
complement(3423930..3427460)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSERTVAPGAPGVPGVPPASTTTEVPSQGRHPADGQLADARPAAEQRAGDQLAGEQRAGE
QRAVEPVSAEDIARLLGRDLPTLEQRRIIEAPLGPALVVAGAGSGKTETMAGRVVWLVAN
GLVEPQQVLGLTFTRKAAGELAERVRLRLRRLARAAAEQGVVLPGRAHLEDDVLGGRPTI
ATYNSYAASLVRDHALRLGIDPSARLLGEAAQWQLASEVVEAWQEDLGVDAAVSTVVEAV
LRLSGALDEHLLDPAAARDGIAAICADIEATPTPTRAHYAEVVALLGSLRERERLLDVVA
AYRARKRASDAIDFGDQVALAARLAREVPEVGAGERERFAVVLLDEYQDTSFAQLTLLAA
LFGDGHPVIAVGDPHQSIYGWRGASAGGLERFPTTFRRPAAEGGGPAQVLALTTSWRNDV
KVLDAANHVAGPLRSRTTRVPVPQLVASPVAGPGHVDAFLASTAAEEAEAVAEFVAAHWR
PAGQGTDGGRVSAAVLCRKRSQFAALRRALRARGLPVEVVGLGGLLSTPEVVDVVAALQA
AYDPLRGDALVRLMTGARTRLGAADLHALAAWAGELVGQRTGRDAGVELDVIDERSIVDA
LDELPRPGWRSPGGRALSDEGRARLADLAGLLRTLRAHSYLAVPDLVAEAERLLGLDIEV
AARAGVGAGRARAQLDAFRDVAVDFARSVDTPTLGGFLSWLEAADARENGLELPVTDPDP
DAVQLITVHAAKGLEWDVVAVAGLVDGVFPTTATQGKDGPKDSAWLTGLGELPYPLRGDA
DDLPRLEYAGAQDPKELRDRVHGLRLDAGEHEVAEERRLAYVALTRARHRLLLTGSWWGD
GKKPRPPSTFLVELAEAGLVDAAQWAGEPAPDDENPASSEAATAVWPADPFAVEDGPGRR
PAVEQAAAWVRAASARPDARPDDDCAEESRAGESRWEVLARTLLEEQRAARESTGAVDLP
SHLSASALVRLGADATEFARGLRRPVPAEPSGRARLGTRFHAWVEGYYGAATLVDLDALP
GAEDEDLSGPDQVDVDEARLRAAFLASAWADRRPLQVEADVETHVAGYVLRSRIDAVFPA
APGDPVPDGEGVVVVDWKTGSAPRDAATREAREIQLAVYRLAWSRFSGVPLERVAAAFHY
VAGGETVWPQRLLGEDEIAALLERVTDDGAVDVRRA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcgcacggtcgcgcccggagcgcccggggtccccggggtgccgcccgcgagc
acgacgacggaggtgccctcgcaggggcggcacccggcggacgggcagctcgccgacgcg
cggcccgccgccgagcagcgggccggcgatcagctggccggcgagcagcgggccggcgag
cagcgggctgtcgagccggtcagcgccgaggacatcgcgcggctgctcgggcgcgacctg
ccgacgctcgagcagcgccgcatcatcgaggctccgctcggccccgcgctcgtcgtcgcg
ggtgcgggctcgggcaagaccgagacgatggcggggcgcgtcgtgtggctcgtcgcgaac
gggctcgtcgagccgcagcaggtgctcggcctgacgttcacgcgcaaggccgcgggcgag
ctcgcggagcgcgtgcggctgcggctgcggcggctcgcgcgcgccgcggccgagcagggc
gtggtgctgccgggccgcgcgcacctcgaggacgacgtcctcggcggacgcccgaccatc
gcgacgtacaactcctacgccgcgtccctggtgcgcgaccacgcgctgcgcctgggcatc
gacccgagcgcgcggctgctcggcgaggccgcgcagtggcagctcgcgagcgaggtcgtc
gaggcatggcaggaggacctgggcgtcgacgccgcggtctccaccgtggtggaggccgtc
ctccggctgtccggcgcgctcgacgagcacctgctcgacccggcggccgcgcgggacggc
atcgcggcgatctgcgcggacatcgaggcgacgccgacgcccacgcgcgcgcactacgcc
gaggtggtggccctgctgggctcgctgcgcgagcgtgagcggctgctcgacgtcgtcgcg
gcgtaccgggcccgcaagcgcgcgagcgacgcgatcgacttcggcgaccaggtcgcgctc
gcggcgcggctcgcgcgcgaggtccccgaggtgggcgcgggcgagcgcgagcggttcgcg
gtggtgctgctcgacgagtaccaggacacgtcgttcgcgcagctcacgctgctcgcggcg
ttgttcggcgacgggcacccggtgatcgccgtgggtgacccgcaccagtcgatctacggg
tggcgcggcgcgagcgcgggcgggctcgagcggttcccgacgacgttccgccgcccggcg
gccgagggcggcggtcccgcgcaggtgctcgcgctcacgacgtcgtggcgcaacgacgtg
aaggttctggacgcggccaaccacgtggccggcccgctgcgctcccgcacgacccgggtg
cccgtgccgcagctcgtcgcgagcccggtggcgggaccggggcacgtcgacgcgttcctg
gcgtcgaccgcggccgaggaggccgaggcggtcgccgagttcgtcgcggcgcactggcgg
cccgcggggcagggaaccgacggcggtcgcgtgagcgcggcggtgctgtgccgcaagcgg
tcgcagttcgcggcgctgcgccgcgcgctgcgtgcccgcgggctgccggtcgaggtcgtc
ggcctgggcggtctgctctcgacgcccgaggtggtcgacgtcgtcgccgcgctgcaggcc
gcgtacgacccgctgcgcggggacgcgctcgtgcggctcatgacgggcgcgcgcacgcgc
ctgggcgctgcggacctgcacgcgctcgcggcctgggccggcgagctcgtcgggcagcgc
acgggacgcgacgccggggtcgagctggacgtgatcgacgagcgcagcatcgtcgacgcg
ctcgacgagctgccgcgccccgggtggcgcagccccggcggacgtgccctgagcgacgag
ggccgcgcccggctcgccgacctcgccggcctcctgcgcacgttgcgcgcgcactcgtac
ctcgcggtgccggacctggtcgccgaggcggagcgcctgctcggcctcgacatcgaggtc
gccgcgcgggccggcgtcggcgcgggtcgggcgcgagcgcagctcgacgcgttccgggac
gtcgcggtcgacttcgcgcggtccgtcgacaccccgacgctcggcggcttcctgtcgtgg
ctcgaggcggccgacgcgcgcgagaacggcctcgagctgcccgtgaccgaccccgacccg
gacgcggtccagctcatcaccgtgcacgccgcgaagggcctcgagtgggacgtcgtcgcg
gtcgcgggcctggtcgacggcgtgttcccgaccaccgcgacgcagggtaaggacggcccc
aaggactcggcgtggctcacgggtctcggcgagctgccctacccgctgcgcggcgacgcc
gacgacctgccgcgcctggagtacgcgggcgcgcaggacccgaaggagctgcgcgaccgg
gtgcacgggctccggcttgacgcgggcgagcacgaggtcgccgaggagcgccgcctcgcg
tacgtcgcgctgacccgtgcccggcaccgcctgctgctcaccgggtcgtggtggggcgac
ggcaagaagccgcgcccgccgtcgacgttcctggtcgagctcgcggaggcggggctcgtg
gacgccgcgcagtgggcgggcgagcccgcgcccgacgacgagaaccccgcgtcgagcgag
gccgcgacggccgtgtggcccgccgacccgttcgcggtcgaggacggacccgggcgacgg
cccgcggtcgagcaggccgccgcgtgggtgcgcgcggcgtcggcccgccccgacgcgcgg
ccggacgacgactgtgcggaggagagccgggcgggggagagccggtgggaggtgctcgca
cgcacgctgctcgaggagcagcgcgcggcccgcgagtcgacgggcgcggtcgacctgccc
tcgcacctgtcggcgtccgcgctggtgcggctcggcgccgacgcgacggagttcgcgcgg
ggcctgcgtcgtccggtgcccgcggagccgtcgggccgggcgcggctcggcacgcggttc
cacgcgtgggtcgagggctactacggcgccgcgacactcgtcgacctcgacgcgctgccg
ggcgccgaggacgaggacctgtcggggccggaccaggtcgacgtcgacgaggcgcggctg
cgtgccgcgttcctcgcgtccgcgtgggcggaccgccgcccgctgcaggtcgaggcggac
gtcgagacgcacgtcgcgggatacgtgctgcgctcccgcatcgacgcggtgttcccggcc
gcgccgggcgacccggtgcccgacggcgagggcgtggtcgtcgtcgactggaagacgggc
tcggcgccgcgcgacgcggcgacgcgcgaggcgcgcgagatccagctcgcggtgtaccgg
ctcgcgtggtcgcggttctcgggggtgccgctcgagcgcgtcgcggcggcgttccactac
gtcgcgggcggtgagaccgtgtggccgcagcgactgctgggtgaggacgagatcgccgcg
ctcctcgagcgcgtcaccgacgacggggcggtcgacgtgcgccgggcgtga
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