Cellulomonas palmilytica: F1D97_16355
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Entry
F1D97_16355 CDS
T08423
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpal
Cellulomonas palmilytica
Pathway
cpal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F1D97_16355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpal03021
]
F1D97_16355
03400 DNA repair and recombination proteins [BR:
cpal03400
]
F1D97_16355
Enzymes [BR:
cpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F1D97_16355
Transcription machinery [BR:
cpal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F1D97_16355
DNA repair and recombination proteins [BR:
cpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F1D97_16355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
Motif
Other DBs
NCBI-ProteinID:
UJP39839
LinkDB
All DBs
Position
complement(3624158..3628027)
Genome browser
AA seq
1289 aa
AA seq
DB search
MLDVNVFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
NCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEEGRHEDLPNLQNEIDLERKEIADRRDNDINNRAAKLEAD
LAELEAEGAKADARRKVRDSAEREMAQIRKRADAEIERLEQVWDRFKNLKVADLEGDEML
YRQLQDRYGNYFEGSMGAAAIQKRLEAFDLEAESENLREIIRTGKGQRKTRALKRLKVVN
AFLTTNNSPTGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLYHLTSDKAGAEGEGR
AFSSVAEAVMAFDQGTLDLNAVVKIRFDDLVLSEDDAPEGYEYGQTLLFETTLGRALFNE
LLPVDYPYENGVVDKKRLSVIVNDLAERYPKVAVAASLDALKEAGFRWATRSGVTIAISD
VATPAAKAGILEEHEARAAKVQGQYEKGLITDDERRQELIEIWTQATDKVAKSMQENFPA
RNTVFRMVGSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGLTMPIGVPGADGALRRHDK
VETSVYSRTLATDIEVDGEVIGHAGDDVGDVLLDRLLESGVDTLKVRSVLTCESRVGTCA
KCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASAEDITQGLPRVQEL
FEARTPKGEAPIAEFSGRVAIEEGDRSRRIVLTPDDGSEEIAYPITKRSRLLVNDGDHVA
VGTQLVQGAVDPKKVLRILGPRKTQEHLVDEVQEVYRSQGVDIHDKHIEVIVRQMLRRVT
VLDSGSTDLLPGELAERGKFEDANRRAVAEGGQPASGRPELMGITKASLATDSWLSAASF
QETTRVLTEAAMSGRSDPLLGLKENVILGKLIPAGTGLPRYRDIAVEPTEEAKAELYPTF
GYDEIDFPALGFGSGEAIPLEDIDFGDLR
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgacgagctgcgtatcggcctggccacggccgacgacatc
cgtgcctggtcgcacggcgaggtcaagaagcccgagaccatcaactaccggaccctgaag
ccggagaaggacggtctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
aactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacgcgttccaaggtgcgccgtgagcgcatgggccacatcgagctggccgccccc
gtcacgcacatctggttcttcaagggtgtgccgtcgcgtctgggctacctgctcgacctg
gcgcccaaggacctcgagaaggtcatctacttcgcggcctacatgatcacgtgggtcgac
gaggagggccgtcacgaggacctcccgaacctccagaacgagatcgacctggagcgcaag
gagatcgcggaccgccgcgacaacgacatcaacaaccgcgccgcgaagctcgaggccgac
ctggccgagctcgaggcggagggcgccaaggccgacgcgcgccgcaaggtgcgtgactcg
gcggagcgcgagatggcgcagatccgcaagcgtgcggacgcggagatcgagcgtctcgag
caggtctgggaccggttcaagaacctcaaggtcgcggacctcgagggcgacgagatgctc
taccgccagctccaggaccgctacggcaactacttcgagggctcgatgggcgccgcggcg
atccagaagcgtctcgaggcgttcgacctggaggcggagtcggagaacctgcgcgagatc
atccggacgggcaagggccagcgcaagacgcgcgcgctcaagcgcctgaaggtcgtcaac
gcgttcctcacgacgaacaactcgccgacgggcatggtcctcgacgcggtgccggtcatc
ccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccacgtcggacctg
aacgacctgtaccgccgcgtcatcaaccggaacaaccgcctcaagcggctcctggacctg
ggcgctccggagatcatcgtcaacaacgagaagcggatgctccaggaggccgtggactcg
ctgttcgacaacggccgccgcggccgcccggtcacgggccccggcaaccgcccgctcaag
tcgatctccgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtgatgaagcgcctc
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcgcgcgc
ccggtcgtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gcgatccacctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgcccctgagcgcggaggcgcaggccgaggcccgcatcctcatgctc
tcgagcaacaacatcctcaagccgtcggacggtcgtccggtgaccatgccctcgcaggac
atgatcatcggtctgtaccacctgacgtccgacaaggccggtgccgagggcgagggccgg
gcgttcagctcggtcgccgaggccgtcatggcgttcgaccagggcacgctcgacctcaac
gcggtcgtcaagatccggttcgacgacctggtgctgtccgaggacgacgcgcccgagggc
tacgagtacggccagacgctgctgttcgagacgacgctgggccgtgcgctgttcaacgag
ctgctgcccgtcgactacccgtacgagaacggcgtcgtcgacaagaagcgcctgtcggtc
atcgtcaacgacctcgccgagcgctacccgaaggtcgccgtcgcggcgtccctcgacgcg
ctcaaggaggccggcttccgctgggccacgcggtccggcgtgaccatcgcgatctccgac
gtcgccacgccggcggcgaaggccgggatcctcgaggagcacgaggcgcgcgcggcgaag
gtgcagggccagtacgagaagggcctcatcaccgacgacgagcgtcgtcaggagctcatc
gagatctggacgcaggccaccgacaaggtcgccaagtcgatgcaggagaacttccctgcg
cgcaacacggtgttccggatggtcggctcgggtgcgcgtggtaactggatgcaggtccgt
cagatcgccggtatgcgcggtctcgtggcgaacccgaagggcgagatcatccctcgcccg
atcaagtccaactaccgcgagggcctgtccgtcctcgagtacttcatcgcgacgcacggt
gcccgcaagggtctggcggacaccgctctgcggaccgccgactcgggttacctcacgcgt
cgtctggtggacgtctcgcaggacgtcatcgtccgcgaggaggactgcggcacggagcgc
ggcctgacgatgccgatcggcgtcccgggcgcggacggtgcgctgcgtcgtcacgacaag
gtcgagacgagcgtctactcgcgcacgctggcgacggacatcgaggtcgacggcgaggtc
atcggtcacgccggtgacgacgtcggcgacgtcctgctggaccgtctgctcgagtcgggc
gtcgacacgctcaaggtgcgctcggtgctcacctgcgagtcgcgcgtcggcacgtgcgcg
aagtgctacggccgttcgctggccaccggcaagctcgtcgacatcggtgaggccgtcggc
atcatcgcggcgcagtcgatcggtgagcccggcacgcagctgacgatgcgtaccttccac
accggtggtgtcgcctccgcggaggacatcacgcagggtctgccgcgtgtccaggagctc
ttcgaggcccgtacccccaagggtgaggcgccgatcgcggagttctcgggccgggtggcg
atcgaggagggtgaccgttcgcggcgcatcgtcctgacgccggacgacggctcggaggag
atcgcgtacccgatcaccaagcgctcgcgtctgctcgtgaacgacggcgaccacgtcgcg
gtcggcacgcagctggtgcagggtgccgtggacccgaagaaggtcctgcgcatcctcggc
ccgcgcaagacgcaggagcacctggtggacgaggtgcaggaggtctaccgctcgcagggc
gtggacatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcgtcgcgtgacg
gtgctcgactccggctcgaccgacctgctgcccggcgagctcgccgagcgcgggaagttc
gaggacgcgaaccgtcgggcggtcgccgagggcggtcagccggcctcgggtcgtccggag
ctcatgggcatcacgaaggcgtcgctcgcgacggactcgtggctgtcggcggcctccttc
caggagaccacccgcgtgctcaccgaggcggcgatgtcgggtcgttccgacccgctgctc
ggcctcaaggagaacgtcatcctcggcaagctcatccccgccggcaccggcctgccgcgt
taccgcgacatcgccgtggagccgacggaggaggcgaaggccgagctgtacccgacgttc
ggctacgacgagatcgacttccccgccctgggcttcggctcgggcgaggcgatcccgctc
gaggacatcgacttcggcgacctgcgctga
DBGET
integrated database retrieval system
