Carica papaya (papaya): 110806684
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Entry
110806684 CDS
T05151
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03015
mRNA surveillance pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110806684
09123 Folding, sorting and degradation
03018 RNA degradation
110806684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110806684
03041 Spliceosome [BR:
cpap03041
]
110806684
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110806684
mRNA cycle factors
Stress granule specific factors
110806684
Spliceosome [BR:
cpap03041
]
Complex C
Other components
Complex C specific factors
110806684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_Nup35
RRM_3
RRM_7
YflT
RRM_MARF1
GH97_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
110806684
NCBI-ProteinID:
XP_021887295
LinkDB
All DBs
Position
Unknown
AA seq
644 aa
AA seq
DB search
MAQVQIQVPGQNANGAAVGNQFVTTSLYVGDLDVNVTDSQLYDAFNQVGQVVSVRVCRDL
TTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPSLRKSGSGNIFIKNL
DKLIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQYDNEESAQKAIEKLNGMLLND
KQVYVGPFLRKQERDSVTSKTKFNNVYVKNLSESTTDDDLKNVFSEFGTITSAVVMKEGD
GKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSEREVELKLRFEQSMREA
ADKFQGSNLYVKNLDDSIGDDKLKELFSQFGTITSCKVMRDPNGISKGSGFVAFSTPEEA
SRALLEMNGKMVVSKPLYVAIAQRKEDRRARLQAQFSQMRPVAMTPSVAPRMPMYPTGGP
GIGQQIFYGQAPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRR
GGAVQQTPQAVPLMQQQMIPRGRVYRYPPGRGLPDVPMPGVAGGMLSVPYDMGGMPLRDS
TISQPIPIGALATALANATSEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH
LLESPEALKAKVAEAMEVLRSVAQQQQAGNPADQLASLSLNDNL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagttcagattcaggtgccaggccagaatgcgaacggagctgcggtggggaac
cagttcgtgacgacgtcgctttacgtcggcgatctggacgtgaacgtgacggattcgcag
ctgtacgatgcgtttaatcaggtgggtcaagtcgtttctgttcgggtctgcagggacttg
acgacccggagatcgctcggttacggctatgttaactacagcaacccacaagatgctgca
agggcactggatgtattgaatttcactcctcttaatggaaagccaattaggattatgtat
tcccaccgtgaccctagtcttcgcaaaagtggttccgggaatatatttataaagaatttg
gataaattgattgaccacaaggcattgcatgatacattttctgcattcggaaacattctc
tcctgcaaggtagctacagattcctcaggccaatcaaagggctatggatttgtacagtac
gacaatgaggaatctgcgcaaaaggctatagagaaattgaatggaatgctattgaatgat
aagcaagtttatgtaggaccctttctgcgcaaacaagaaagagactctgttactagcaag
acaaaatttaacaatgtctatgtaaagaatctctcagagtctacaaccgatgatgacctg
aagaacgtctttagtgaattcggaacgataaccagtgctgtagtgatgaaggaaggggat
gggaaatcaaaatgctttggctttgtgaactttgagaatgcagatgatgctgctagagct
gttgaagcccttaatgggaagaaatttgatgataaggagtggtatgtagggaaagcccaa
aagaaatctgaaagggaagttgaactaaagcttcgatttgagcagagtatgagggaggca
gcagacaaatttcagggatcaaacttgtatgttaagaatttggatgatagcattggtgat
gataaacttaaggagcttttttctcagtttggaaccataacatcgtgcaaggtcatgcga
gaccctaatggaatcagtaaaggatcaggctttgttgcattttcaactcctgaagaagca
tctagagctctgttggaaatgaatggaaaaatggttgtcagcaaacctctatatgtggca
attgcacagcggaaggaagatagaagagccaggttgcaggctcagttttctcaaatgcgg
cctgttgcaatgacaccctctgttgctcctagaatgccaatgtaccccacaggtgggcct
ggtattggacaacagatattctacggtcaggcaccccctgctattattcctcctcagcct
ggatttggatatcagcagcagcttgttcctggtatgaggcctggtggggctcctatgcca
aattttttcgtgcccatggttcagcaaggacagcaagggcagcgtcctggtggcagaagg
ggaggggctgttcagcaaactccacaagcagttccgttgatgcaacagcagatgattcct
aggggccgtgtctaccggtacccaccagggcgtggcctccctgatgttcccatgcctggc
gttgccggaggcatgctttctgttccatatgacatgggcggaatgccactgcgtgattcg
acaatttctcagccaattcctattggagctttagccacagcacttgcaaatgcaacctca
gagcaacagaggacgatgctcggcgagaatctttacccactagtggaacagctagagcct
gatgctgcagccaaggttaccgggatgcttctggagatggatcagactgaagttttgcac
ttgctcgagtcacctgaagcactaaaagctaaagtggccgaggctatggaggttctgagg
agtgttgctcaacaacaacaggccggtaatccggctgatcaactggcctcgttgtcgttg
aatgacaacctctga
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integrated database retrieval system
