Carica papaya (papaya): 110806888
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Entry
110806888 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cpap
Carica papaya (papaya)
Pathway
cpap04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110806888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpap04131
]
110806888
Membrane trafficking [BR:
cpap04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110806888
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
MinC_N
CorA
Motif
Other DBs
NCBI-GeneID:
110806888
NCBI-ProteinID:
XP_021887562
LinkDB
All DBs
Position
Unknown
AA seq
1598 aa
AA seq
DB search
MTKKLTSTKTLMELDLNSFIHSDSDDDSDSVPHRTIDEILNASDSSTSSSPPPSPSSIHH
HRRPQSDIFPSKSESLLLQYDVVSQEPAQSLKPQSSSFTRVNDPIRRVSSSSSSSSSRQL
PALFSGVRSNAKPGAALAAAVAASRSVPTPHAAAIKSRRAGSGTVQKVLDDQELGPNAVE
DHEISSSTVESIGVVTEASRSVADYKLGDFQGKRESGGDFVGVYKEAEVEEVRTSNIWDD
GLVGTCESRSSSKFETVIASVYPSFDVDDSMLDSRVISSGNVKNERVSLASSSEISTCAD
MNDSDRMSVSSSPLDAKDRNIEENLTIAELDKGNLDKGMIDHKNDEVGGGDGDDDDDDDG
SSMSDISELVEERLGQLESERINKRAEKKFQASKKPLELAEELEKKQASTGLHWEEGAAA
QPMRLEGVRRGSTTLGYFDIDTDNTITRTISSQAFRRDHGSPQVLTVHLNYIAVGMSKGV
IVVVPSKYSTHGADNMESKMLFLGLQAERCYAPVTSMCFNQQGDLLLNSAVSSGSIGSMM
GGVVGGDAGWKLFNEGSSLNEEGVVIFVTYQTALVVRLSPTLEVYAQLSRPEGVRKGSMP
CTAWKCVMQSCTSSAESASTEAAERVSLLAIAWDRKVQVAKLVKSELKVYGKWSIDSAAI
GVAWLDDQLLVVLTLTGQLYFFAKDGTVIHQTNFGVNGSAGDDLVAYHTYFTNVFGNPEK
AFHNCIAVRGASIYILGNMHLIVSRLLPWKERIHVLRRAGDWMGALNMAMTLYDGQAHGV
IDLPRALDDVQEAIMPHLVELLLSYVDEVFSYISVAFCNQIEKVENEPVSRSTSLHSEIK
EQYARVVGVAVEFCIHIKRTNILFDEIFSRFLAVHQRETFLELLEPYILKDMLGSLPPEI
MQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYGALVYLFNKGLDDFRA
PLEELLVVLRNSHGESAVALGYRMLVYLKYCFSGLAFPPGQGTLPPTRLPSLRTELLQFL
LEDSDARNSQAASDLVFGGACLNLYHLLKLDTEATLDVLRCAFVEDETPKADFSFSESAY
VNSDGKGENKLMAESQNILVQKTIDSLVHIVDGDVSKKVGSTSIEDAGSAEAWPSKKDLG
HLFEFIAYYVACCRSNISKRVFTQILEYLTSENNFPSSASSKKRENQLLALLKVLPEFDW
DGSYVLHLCEKAHFYQVCGFIYTMRHQNLSALDSYMRDVDEPIHAFSFIHEILQQLSGNE
LAAFRSAVISRISQLVDLNRECAFFLVIDCFNDESSDILSGLNSHPKSLFLYLKTIIEVH
LSGTLDFSKLRKDDDVNVDDSYRRRVKDSSKRLKAYLERISDFPKFMRNNPVNVTDDMIE
LYLELLCQFERDSVLKFLETFDSYRVEHCLRLCQEYGIVDAAAFLLERVGDVGSALVLTL
SGLDDKFMELDAAVLSLVSNSSLSESATMTHLPTVLNFKEVNDIFDVLHASIGLCKRNTP
RLNPEESETLWFHLLDTFSKPIMGSYADQRKSERESHNGILDMSLELQEDEGACIIKWRI
SIPGGGVHILEKVVLSFIXEIVEEMIGYVRLPSIMSKL
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaagctcaccagtacaaaaaccttaatggagctcgatctcaactctttcatc
cactcggactccgatgacgactcagattcagttcctcatcgtacgattgacgaaatcctc
aacgcctctgattcctctacatcatcttctcctcccccatccccgtcatctattcaccac
catcgtcgacctcagtcagatatcttcccttccaaatccgaatccttgctccttcaatac
gatgtcgtttcgcaggaaccggcacaatctctaaaaccacagtccagttcctttactcgg
gtgaacgatccgattcgaagagtttcttcttcttcttcttcctcctcttcgagacagttg
ccggccctgttcagtggagtaagatcgaatgcgaagccgggagcggctttggcggctgcc
gtggcggcatcgaggtctgtgccgaccccgcatgcagcagctatcaagtcgaggagggca
ggcagtgggaccgtgcagaaggttctggatgatcaagaattgggcccgaacgcggtcgaa
gatcacgagatttcttcctcaactgtggagtcaattggagttgttacggaagcaagccgc
tctgttgctgactacaaattgggcgatttccaaggcaagcgtgagagcggaggagatttt
gtgggtgtatataaggaagctgaagtggaggaagttagaacgagtaacatttgggatgat
ggcttagtgggtacatgtgaatcacgatcgagttcgaaatttgaaacggtgattgcttct
gtttatccttcctttgatgttgatgactctatgctggactcaagagtaatcagttctgga
aatgttaaaaacgaaagagtctcccttgcttcttctagtgagatttccacgtgtgcggat
atgaatgattctgatagaatgagtgtttcttcttctccgttggatgctaaggatagaaat
attgaggagaatttaacaatagccgaattggataagggaaatttggacaagggtatgatt
gatcataaaaatgacgaggttggtggtggggatggagatgatgatgatgatgacgatggg
agttcaatgagtgacatttcagaacttgtagaagaaagacttgggcaactggagagcgag
aggattaataaaagagctgaaaagaagtttcaggcatccaagaagccacttgaattggcg
gaagagttggagaaaaaacaggcttctactggtttgcactgggaagagggtgctgctgct
caacccatgaggcttgagggtgttaggaggggttcgacaaccttgggttactttgacatt
gataccgataataccattacacgaaccatttcatcacaggcattcaggcgagatcatggt
tccccacaggttttgacggttcatctaaattatattgcagtggggatgtcaaaaggagtt
attgttgttgtgcccagcaaatactccactcatggtgctgataacatggagtcaaagatg
ttgtttctaggtctgcaagctgaaaggtgctatgctccagttacttccatgtgcttcaat
cagcaaggtgatttgctcttaaattctgcagtttcatctggcagcataggcagcatgatg
ggaggtgttgttgggggagatgcaggttggaaactcttcaatgagggttcatctttgaat
gaagaaggtgtagtcatatttgtcacctatcagactgctctggtggtaaggctcagcccc
actttagaagtctatgcacagctttctaggccagaaggggttcgaaagggttccatgcca
tgtacggcatggaaatgcgtgatgcaatcttgtacttcttctgcagaaagtgcttctact
gaagcagcagagagggtttctttgcttgcaattgcttgggataggaaggtacaggttgca
aagctggtgaaatcagagttgaaggtttatgggaagtggtccattgatagtgcggctatt
ggtgtggcttggttggatgatcagttactggtggttttaacattgaccggtcagctctat
ttttttgcaaaggatgggactgtgattcaccaaacaaattttggtgtaaatgggtctgca
ggagatgatcttgttgcatatcatacttacttcactaatgtttttgggaaccctgagaaa
gcttttcacaattgtatagctgtaagaggggcttctatatacatacttggaaatatgcat
cttattgtttcgcgtcttcttccatggaaagaacgaattcatgttttgcggagagcaggt
gactggatgggtgccttaaacatggcaatgacactttatgatggccaagctcatggtgtc
attgatctgcctagagcactggatgatgtacaggaggccataatgcctcatcttgttgag
ttgcttttatcgtatgtagatgaagtattttcttatatttcagtagcattttgcaaccag
attgaaaaagttgaaaatgagccagtgtctagaagcacttcactgcactctgaaataaaa
gagcaatacgcacgggttgttggtgttgcagtcgaattctgcattcatattaagagaacc
aacatcctttttgatgaaattttctccagatttttggctgttcatcaaagagaaacattt
ctggagcttttggagccgtacattctaaaggacatgcttggatctctaccccctgagatt
atgcaagcactggtggagcattatagcagcaaaggatggttacaacgagttgaacaatgt
gtccttcacatggacatttcttccttggatttcaatcaggttgtcaggttatgcagggag
catggattgtatggtgctttagtatatcttttcaataaagggttggatgatttcagggca
cctttggaagagctattggttgtgttgcgaaatagtcatggagaaagtgccgtagccctt
gggtacaggatgcttgtttatcttaagtactgcttttcaggccttgctttcccaccagga
caagggactcttcctcccacacgcttgccatcccttagaactgaacttctgcaattccta
ttagaggattctgatgcccgcaattcacaagctgcttcggatttagtctttggaggagca
tgcttgaacctgtaccatctcttaaagctagatactgaagctacattagatgttctgagg
tgtgcatttgtggaagatgaaaccccaaaagctgacttctccttttctgagtcggcttat
gtgaattcagatggtaagggagaaaacaagttgatggctgaaagtcagaatattttggtg
cagaagacgattgattctctggttcatattgttgatggagatgtctctaaaaaagttgga
tctactagcattgaagacgctggatcagcagaagcatggccttcaaagaaagaccttggt
cacctatttgagttcattgcatattatgttgcttgttgtagaagtaatatctccaaaagg
gtattcactcagattttagagtacctgacatctgaaaataattttccctcaagtgcttct
tccaaaaagagagagaaccagttattagcccttctgaaagtactgccagagtttgattgg
gatggatcttatgtgttacatctttgtgagaaggcacacttttaccaggtttgtggcttt
atttacaccatgagacatcagaatctttctgctttggatagctatatgagagatgtagat
gaacctattcatgccttctcttttatccacgaaatattgcaacagctgagtggcaatgaa
cttgctgcttttcgatccgcagttatatctcgaatttcacaacttgttgacttaaacaga
gaatgcgcattcttcctagtcatcgactgttttaatgatgaaagttcggatattctatct
ggacttaattctcatccaaaaagccttttcctttatctgaagaccattattgaggttcac
ttatctggaaccctcgacttctctaaattaagaaaagatgacgatgtgaatgtggatgat
tcttatagaagaagggtaaaggattcatccaaaagactcaaggcatacttggaaaggata
tctgacttccctaaattcatgcgtaataatcctgtgaatgtgactgatgatatgattgaa
ctttatttagagctactatgccagtttgaacgagattcagttctcaaattcttggaaact
tttgatagctaccgggtggaacactgtctacgcttgtgccaggaatatggaattgttgat
gcagctgcatttttattagaaagggttggtgatgttgggagtgctcttgtacttacactt
tctggtcttgatgacaaatttatggagcttgatgctgctgttttaagtttggtttcaaac
tcaagtttgagtgaatctgccaccatgacgcatctccccacagttttaaactttaaggag
gtgaatgacatatttgatgtgttgcatgcttctattggattatgtaagcggaatacccct
cgcttgaatcctgaggagtcagagactctttggtttcacttacttgacacgttctccaag
ccaataatgggttcatatgctgatcaaaggaaatcagaaagagaaagccataatggaatt
cttgatatgtcattagaattacaagaggatgaaggggcatgcataattaagtggagaatc
tcaattcctggtggaggtgtccatatcttggagaaagttgttctctcattcattnaagag
attgttgaggaaatgataggatatgtccgccttccaagtataatgtcaaaactg
DBGET
integrated database retrieval system
