KEGG   Carica papaya (papaya): 110807029
Entry
110807029         CDS       T05151                                 
Name
(RefSeq) THO complex subunit 4B
  KO
K12881  THO complex subunit 4
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03013  Nucleocytoplasmic transport
cpap03015  mRNA surveillance pathway
cpap03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110807029
  09122 Translation
   03013 Nucleocytoplasmic transport
    110807029
   03015 mRNA surveillance pathway
    110807029
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpap03019]
    110807029
   03041 Spliceosome [BR:cpap03041]
    110807029
Messenger RNA biogenesis [BR:cpap03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110807029
    TREX complex
     110807029
Spliceosome [BR:cpap03041]
 Complex C
  Other components
   EJC/TREX
    110807029
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110807029
SSDB
Motif
Pfam: RRM_1 FoP_duplication Cauli_VI
Other DBs
NCBI-GeneID: 110807029
NCBI-ProteinID: XP_021887739
LinkDB
Position
Unknown
AA seq 239 aa
MANRLDMSLDDIINSSKKSDGSNMRGRGSRGSVTGPSHRFSNRAAYRTAPYPVQAPYAGW
QYDTFMEDAGGFMARVGGPSSIESGTKLYISNLDYGVSNEDIKELFSEIGDLKRYAIHYD
RSGRSKGTAEVVFSRWSEALAAVKRYDNVQLDGKPMKIDIVGPNIMAHSVLPSATNGMYV
NRYGAARRGRGRGNGMGQPRVSGRGTRRGRQVRGYGEKISAEDLDADLDKYHKEAMETN
NT seq 720 nt   +upstreamnt  +downstreamnt
atggcgaatcgcttggacatgtccctcgacgatatcatcaactcaagtaagaagtccgac
ggttccaatatgcggggtaggggttctcgcggctcggttacaggcccttctcatcgcttc
tctaaccgcgccgcttatcgaacggctccgtatccggttcaagcgccctatgctggttgg
cagtacgacacgttcatggaagatgcggggggtttcatggcacgagtaggtgggccttcc
tcgatagagagcgggactaagctttatatttccaatttggattatggggtttcgaatgaa
gacatcaaggagctcttttcagagattggtgacctaaagcggtatgcaattcattatgat
cggagtggaaggtcaaagggaacagctgaagttgtcttctcaaggtggagtgaagctctg
gctgctgtcaagagatatgataatgttcaactagatggaaagcctatgaaaatcgatatt
gtcggaccaaatatcatggcacactctgttctgccttcagctacaaatggaatgtatgta
aatcgatatggagctgctagaagaggtcgaggtagaggtaatggaatggggcagcctcgt
gttagtggccgtggaaccaggaggggtcgtcaggtcagaggttatggtgaaaaaatttct
gccgaagatcttgatgctgatttagataaatatcacaaagaagcaatggaaacaaactga

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