Carica papaya (papaya): 110807179
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Entry
110807179 CDS
T05151
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03022
Basal transcription factors
cpap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110807179
09124 Replication and repair
03420 Nucleotide excision repair
110807179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110807179
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110807179
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110807179
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110807179
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Motif
Other DBs
NCBI-GeneID:
110807179
NCBI-ProteinID:
XP_021887908
LinkDB
All DBs
Position
Unknown
AA seq
578 aa
AA seq
DB search
MATRPVEKRVKYKTSVKDSGTPGFLRMREEMFIFIPNDPRSTTKLKVQLQTIKGQKHTKE
GSNKPPWLNLSNKQGGSYIFEFENYSDLQVCRDFVGKVLAKGEDTYEKPTITSHDEQLSA
AEMELRIKLLRENSELQKLHKQFVISGVLTEAEFWATRKKLLGGESNKRSKQQVGLKSGM
VSDIKPSTDGRTNRVTFNLTPEVIFQIFAEKPAVRQAFLNFVPNKMSEKDFWTKYFRAEY
LHSTKNAVAAAAEAAEDEELAVFLKPDDILASEARRKIRRVDPTLDMDADLGDDYTHVAD
HGIFRYEIKEATEELNDLYRRTLSQDLNRHAAVVLEGRAVDIDSEDTRTVAEALARAKQV
SRANVEIDGGENQERLDRISRMTEMEDLQAPRDPPLAALCIKDPRDYFDSQQANHAEAYE
SLKEIISLVKAKGLSNPILKSDVAFKVFNGLTHNISSAKYHLGKNPQESVLDRLPNSTKE
ELLHHWTSIQELLKHFWSSYPITATHLQIKVGRLKDAMSDIYPQLEALKESVQSELRHHV
SLLVRPMQQALEAAFQHYDADLQRRSSKVGERPNGYYV
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaggccagtggagaaacgagtcaagtacaaaacttcagtgaaagattcgggt
actcctggtttcctcagaatgagggaagagatgtttatattcatccccaatgatccaagg
tcaactacaaagctcaaagtgcagcttcaaaccataaaaggtcaaaaacacaccaaggag
ggatcaaataaaccaccctggcttaatctaagcaataagcagggtggaagttacatattt
gagtttgaaaattattctgatctccaagtttgccgagattttgtgggcaaagtccttgca
aaaggtgaagatacgtatgagaaacctaccataacatctcatgatgagcaactcagtgca
gcagaaatggagctccgaatcaagctgttgcgagaaaatagtgagttgcagaaattgcat
aagcaatttgtgataagtggcgtcttgacagaagccgaattttgggcaactagaaaaaag
ttgcttggtggggaatccaacaagaggtcaaagcaacaggttggtcttaaaagtggcatg
gtttcagatatcaaaccatccactgatggtcggacgaacagagtcacatttaacctgacg
cccgaggtcatttttcagatatttgctgagaagccagctgttcggcaggcattcttaaat
tttgttccaaataagatgtccgaaaaagatttctggaccaaatattttagagcagaatat
ctccatagtacaaaaaatgctgttgctgctgcagcagaggctgctgaagatgaggagctt
gctgtttttctgaagcctgatgacatattggccagtgaagctcggagaaagattagacga
gttgatccaactcttgacatggatgctgatctgggggatgattacacacatgtagctgat
catgggatctttcgttatgaaatcaaggaagcaaccgaagaactgaatgacttatacagg
aggactctgtcgcaagaccttaatcgccatgctgcagttgttcttgaagggagagctgta
gacattgactcagaagacacaaggactgtagcagaggcgcttgcgcgggcaaaacaagta
agtagggctaatgtggaaattgatggaggggaaaaccaggagagattggatagaatttcc
cggatgacggagatggaggatcttcaggcaccccgtgaccctcctttggcagcactttgc
atcaaggatcctcgagattattttgattctcaacaagctaatcacgcagaagcgtatgaa
tctcttaaagaaatcatttctctggttaaagccaaaggcttgagtaatcccatactcaaa
tcagacgtggcttttaaggtttttaatggtttaacgcataatatatcaagtgctaaatat
catttagggaagaatcctcaggagagtgtcctggacaggttaccaaactcaacaaaagag
gaacttctgcatcactggacatctattcaagaattactgaaacatttctggtcatcgtat
ccaattactgctacacatcttcagattaaggttggtagactgaaggacgctatgtcagat
atttatccacagctagaggcattgaaggaatcagtgcaatctgaactccggcaccatgtt
tctctccttgttcgtccaatgcagcaggctctggaagcggcttttcagcattatgatgca
gatttgcagagaaggtcatccaaggttggggagagaccaaacggatattatgtctaa
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