Carica papaya (papaya): 110807187
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Entry
110807187 CDS
T05151
Name
(RefSeq) DNA repair helicase XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03022
Basal transcription factors
cpap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110807187
09124 Replication and repair
03420 Nucleotide excision repair
110807187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110807187
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110807187
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
110807187
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110807187
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110807187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
110807187
NCBI-ProteinID:
XP_021887922
LinkDB
All DBs
Position
Unknown
AA seq
766 aa
AA seq
DB search
MGHGEKGRPNKKLKFSVKDDQRSTNAEDDDTFYGEEPEDDYRDGKKRDFSKLELKPDHAN
RPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLET
ETIVAVLGKLSKTKLPKEMIDFIYESTANYGKVKLVLKKNRYFVESPFPEVLKRLLQDEV
ISRARITSEGSYGRDGFTISKTAGEIGGGHEELLNEAELAAAAEEKETHSFEIDPSQVEN
VKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGI
IVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFRLWSTIREDQICRFTSDSK
ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS
LTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTK
EFFAEYLKKENSKKRQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK
LRKPMIYGATSHVERTKILEAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRR
QEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFK
VITSLPPPDSGADLSYHSQEEQLMLLAKVLNAGDDMVGLEQLEEDADDIALHKARRMMGS
MSAMSGANGMVYMEYSTGRKHLGQGNVKSKPKDPSKRHYLFKRRYG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggcgagaagggtcggcccaacaaaaagcttaaattttctgtcaaggatgat
cagaggagcacaaatgcagaagatgatgatactttctacggcgaagaacctgaggatgat
tatcgcgatgggaagaaaagggacttcagcaaactagaactaaaaccagatcacgcaaat
aggcctttatgggcctgtgctgatgggaggatttttctcgagaccttttcccctctctac
aaacaagcatacgattttcttattgccatagctgaaccagtttgcaggccagagtctatg
cacgaatataacttgacaccacattctttgtatgccgcggtatcagttggtttggagaca
gaaaccattgttgctgttttgggtaagttgtcaaagaccaagctacccaaggagatgatt
gacttcatttatgaatccactgccaattatggcaaagtgaaactcgtgttgaaaaagaat
cgctactttgttgaatccccatttccagaggtattgaagaggctgcttcaagatgaagtg
atatcgcgagcaaggattacttctgagggttcttatgggagagatggatttactatcagc
aaaaccgcgggtgaaattggaggtggtcatgaagagttgttgaatgaagcggaattggcc
gctgcggctgaagagaaggaaactcattcatttgagattgatccttcacaggtggagaat
gtgaagcaacgttgcttgccaaatgctttaaactatccaatgttagaggagtatgatttc
agaaatgacactgtcaaccctgacctggacatggaattgaagcctcacgcccaacctcga
ccatatcaagaaaaaagtcttagcaaaatgtttggaaatggtagagcaagatctggcatt
attgtcttaccttgtggtgctggaaaatctcttgttggtgtctctgcagcatctcgtatt
aagaagagttgtctttgtttagcaacaaatgccgtttcagttgatcaatgggcattccag
tttaggttatggtcaaccatacgagaagatcaaatctgtcgtttcacatctgatagcaaa
gaaaggttccgtggcaatgctggtgttgtcgtgacaacatacaacatggttgcttttggt
ggtaaacggtcagaggaatctgagaagataattgaagaaataagaaacagggaatgggga
ctgttgcttatggatgaggtgcatgtggtcccggctcatatgttccgaaaagtaatcagt
ctcaccaaatctcactgcaaattggggcttactgcaacacttgtgagagaggatgaaagg
attacagatctgaacttcctaattggtcccaaattgtatgaagccaactggttggattta
gtgaaaggtggattcatagcaaatgtacagtgtgctgaggtgtggtgtccaatgacaaag
gagttctttgcggaatatttgaagaaagaaaattccaagaagagacaggcactctatgtg
atgaacccaaataaatttagagcttgtgagtttctcatacggttccatgaacaacaacgt
ggtgataagataattgtgtttgctgacaatctatttgcactcactgagtatgcaatgaaa
ctccgcaagcctatgatctatggtgctaccagccatgttgagagaactaaaattcttgaa
gctttcaaaactagtcgagatgttaacactatcttcctatcaaaggtgggtgataactca
atagatattcctgaagcaaatgtgataattcagatctcatcacatgctgggtcaagacgt
caagaagcccaacgtttgggtcgtattcttagggcaaagggtaaacttcaagataggatg
gcaggtggcaaagaggaatacaatgcatttttctattctcttgtttctacagatacacag
gaaatgtactactcaactaaaagacagcaatttctgattgatcagggttatagctttaag
gtaataacaagcttgccgcctcctgattcaggggcagatttgagctaccacagtcaggag
gagcaattgatgcttctcgcaaaggtcttgaatgctggtgatgatatggttggtttggag
cagttggaagaagatgcagatgatatagcactccacaaagctcgtcgcatgatgggatct
atgagtgcaatgtctggtgcaaacgggatggtttacatggaatatagtactggacgcaaa
catctagggcaaggcaatgtgaaaagcaagcctaaggatccatccaagaggcactatttg
tttaaaagacgttatggataa
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