Carica papaya (papaya): 110807370
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Entry
110807370 CDS
T05151
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110807370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110807370
03041 Spliceosome [BR:
cpap03041
]
110807370
03009 Ribosome biogenesis [BR:
cpap03009
]
110807370
03016 Transfer RNA biogenesis [BR:
cpap03016
]
110807370
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110807370
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110807370
Spliceosome [BR:
cpap03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110807370
Complex C
U4/U6.U5 tri-SnRNP related factors
110807370
Ribosome biogenesis [BR:
cpap03009
]
Eukaryotic type
Pre-60S particles
Helicases
110807370
Transfer RNA biogenesis [BR:
cpap03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110807370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
nSTAND3
Motif
Other DBs
NCBI-GeneID:
110807370
NCBI-ProteinID:
XP_021888186
LinkDB
All DBs
Position
Unknown
AA seq
811 aa
AA seq
DB search
MASLKRKFVEEAGGEIPPPQKQQRESVLLTGDGPVSCIHDVSYPEGYVPPPLSGPAAQED
LKPAKEFPFTLDPFQSEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTS
PIKALSNQKYREFKEEFSDVGLITGDVTIDPNASCLVMTTEIWRSMLYKGSEIMREVAWI
IFDEVHYMRDRERGVVWEESIVMAPKKSRFVFLSATVPNAKEFADWVAKVHRQPCHIVYT
DYRPTPLQHYISPAGGDGSYLVVDEKGKFREDNFQRALNALISPGEGDKKRQSVKSQQGL
TMSRLGEESDIFKIVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNDDEEKENIETI
FTSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDKRGVCILMLDEKL
EPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDLEK
QMKVLEEERDSMIIEEEDSLKNYYNLLQQYRSLKKDVRDIVLSPKYCIPFLRVNRVVCLE
CSLTDEKSPSFSIEDQDTWGLIVDFHRVKDVSEDDANRRPEDASYTIDVLTRCVISKDER
AKKTIKILPLKGHGEPAVVTVPLSQIKFLSSACMKVSKDLLPLEARENALKKLSEFLRRH
PRGLPMDPEGDMKIRSSSYRKAVRRLEALESLFEKHAIAKSPLIEQKLKVLHMKEELTAK
IKSIKKTVRSSTTLAFKDELKARKRALRRLG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctttgaagagaaagtttgttgaggaagcagggggggagattcctcctccgcag
aagcagcagagggagagtgttcttttaaccggggatggaccagtgagctgtatccatgat
gtttcttacccggagggttatgttcctcctcctctttctggcccagcagctcaagaagat
ttgaagcctgcaaaggaatttccattcactctcgacccttttcagtctgaagctatcaag
tgccttgataatggtgagtctgtaatggtttcagcccatacatcagccggtaaaactgta
gtagcattatatgccattgctatgtctttgcggaataagcagcgggtcatatatacttca
cccattaaggcactcagcaaccaaaagtatagggaattcaaagaagagttctctgatgtt
ggtttgatcactggggatgtaacaattgatcctaatgcttcttgcttggtcatgaccact
gaaatctggcgtagtatgctgtacaagggttcagagattatgcgggaagtggcttggata
atttttgatgaggtacattacatgcgtgatcgtgagagaggtgtggtatgggaggagagc
attgttatggcaccaaagaagtctcgttttgttttcctctcagcaactgttcccaatgca
aaggagtttgctgattgggttgcaaaggtccatcgacaaccgtgtcacattgtttatact
gattatcggccaacaccacttcagcattatatttctcctgctggaggtgatggttcgtat
ttggttgtggacgagaagggaaaatttcgagaagacaacttccagagagctctaaatgca
ctaatttcccctggtgagggtgataagaagagacagagtgtaaaatcacaacagggtttg
acgatgagccgacttggtgaagaaagtgacatcttcaagatagtgaaaatgatcattcaa
cgtcaatatgaccctgtcatactttttagttttagcaaaagggagtgcgaatttcttgca
atgcagatggcaaagatggatctaaacgatgatgaggagaaagagaacatagagacaatc
ttcacgagtgccatggacatgctttcagatgatgacaagaaacttccacaggtatcaaac
atgttaccccttctgaaacggggaataggcgtgcatcattctggattgcttcccattctg
aaggaagtaatagagatactatttcaagaaggattgattaagtgtttgttcgctacagag
accttcagcattggtttaaacatgccagccaaaactgttgtctttaccaatgtccgtaaa
tttgatggagacaagtttaggtggatatccagcggagagtacatacaaatgagtggtcgt
gctggtcgtcgaggtattgataagcgtggtgtgtgcatcctgatgttggatgagaagttg
gaaccatctactgctaaaatgatgcttaaaggaagtgctgattgtttgaacagtgccttc
catttaagctacaacatgctgttgaatcaaatgcggtgtgaagatggtgatcctgaaaat
ttgcttcgtaactcattttatcagtttcaagctgaccgtgctattcctgatcttgagaaa
caaatgaaagttcttgaagaagagagagattctatgataattgaagaagaagatagtttg
aagaactattacaatttgcttcaacaatatagaagtttgaagaaggatgtccgtgatatt
gttctttccccaaaatactgcattccctttttgcgagttaacagggtcgtttgtctcgag
tgctctttgactgatgagaagtcaccatctttctcaattgaggatcaggatacatgggga
ctcattgtcgactttcacagagtcaaagatgtttctgaagatgatgcaaatagaagacca
gaagatgcaagctacacaatagatgttcttacaagatgtgtgattagtaaagatgagagg
gcgaaaaaaacgattaaaattctcccactgaaagggcatggagaacctgctgttgtcact
gttcctctgtctcagattaaatttttaagcagtgcatgcatgaaggtttctaaggatctt
ttgcccttagaagctcgagagaatgctctcaaaaagctttcagaatttctccgtagacat
cctcgtgggcttccaatggatcctgaaggagatatgaagatccggagcagctcgtataga
aaggctgtcaggaggttggaggcgttagagagcctatttgagaagcatgcgattgccaaa
tctccactcattgaacaaaagctcaaagttttacacatgaaagaagagttgacagccaag
ataaaatcaattaagaagactgtacgttcttccacgacattggcttttaaagatgaactg
aaggccagaaaacgtgctttacgaaggctagggtaa
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