KEGG   Carica papaya (papaya): 110807822
Entry
110807822         CDS       T05151                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03030  DNA replication
cpap03410  Base excision repair
cpap03420  Nucleotide excision repair
cpap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110807822
   03410 Base excision repair
    110807822
   03420 Nucleotide excision repair
    110807822
   03430 Mismatch repair
    110807822
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpap03032]
    110807822
   03036 Chromosome and associated proteins [BR:cpap03036]
    110807822
   03400 DNA repair and recombination proteins [BR:cpap03400]
    110807822
DNA replication proteins [BR:cpap03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110807822
  DNA Replication Termination Factors
   ELG1-RFC complex
    110807822
Chromosome and associated proteins [BR:cpap03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110807822
DNA repair and recombination proteins [BR:cpap03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110807822
  Check point factors
   HRAD17(Rad24)-RFC complex
    110807822
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_22 Mg_chelatase DUF815 AAA_5 ABC_tran RuvB_N AAA_lid_RFC1 AAA_23 nSTAND6 RsgA_GTPase AAA_2 AAA_24 AAA_29 AAA_16 T2SSE nSTAND3 TsaE
Other DBs
NCBI-GeneID: 110807822
NCBI-ProteinID: XP_021888776
LinkDB
Position
Unknown
AA seq 354 aa
MLWVDKYRPKTLDQIMVHEDIAQNLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLRQIFG
PSAEKVKVENRTWKIDAGSRNIDLEVTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
CLNVRINAPSEEQIVGVLEFVGKKEGLQLPPGFAARITEKSARSLRRAILSFETCRVQQY
PFTSNQTIPPMDWEEYVAEIATDMMKEQSPKRLFQVRGKVYELLVNCIPPEIILKRLLHE
LLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtagacaagtacagaccgaaaacgctagaccagattatggtccatgaagat
atcgcccagaacctcaagaaactggtctcggagcaagattgcccacatttgcttttctat
ggcccgagtggttcgggcaagaaaaccctaatcatggcgcttctcagacaaatttttgga
cccagcgctgaaaaggtgaaggtggagaacaggacatggaaaattgatgctggaagtaga
aatattgatttggaagtgaccacattatcaagcacgaaccatgttgagcttactcctagt
gatgcaggctttcaggacagatatatagttcaagagataattaaagagatggcgaagaat
aggcccattgacacaaaagggaaaaaaggatataaagtgttagtactcaatgaggtcgac
aagctttcacgagaagcacaacattctcttcgaagaacaatggagaaatatagtgcatct
tgccggctaatcttgtgctgtaacagttcttcaaaggttacagaggcaatccggtctcgg
tgtctgaatgtgcgcataaatgcaccttcggaagaacagattgtaggtgtgttggagttc
gttggaaagaaagaagggctgcaacttcctcctgggtttgctgctcgtatcacagaaaaa
tcagctaggagtctgaggagagctatattatcatttgagacttgtcgcgtccaacagtac
ccatttacaagtaaccaaacaatacctccaatggactgggaggaatatgttgccgaaata
gcaaccgacatgatgaaggagcaaagtcctaaaaggctgtttcaggtgcgtggaaaggta
tatgaattgctggttaattgtattccaccagagatcatactcaagaggctgcttcatgaa
ttactgaagaaactggatgccgagctaaagcacgaaatctgccattgggctgcatattat
gaacataggatgcgtcttggacaaaaagccatatttcacattgaagcatttgtggccaag
tttatgagcatttataagagtttcctcattgcaacatttggctga

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