Carica papaya (papaya): 110807951
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Entry
110807951 CDS
T05151
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03440
Homologous recombination
cpap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110807951
03450 Non-homologous end-joining
110807951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpap03032
]
110807951
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110807951
DNA replication proteins [BR:
cpap03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
110807951
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
110807951
BRCA1-C complex
110807951
NHEJ (non-homologous end-joining)
MRX complex
110807951
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
SbcC_Walker_B
Rad50_zn_hook
AAA_29
ABC_tran
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
110807951
NCBI-ProteinID:
XP_021888957
LinkDB
All DBs
Position
Unknown
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKSYKLKLENLQTLKDAAYKLRESISQDQEKTESLKG
QMQDLENSIQNVDGNIHHTEATLKDLRKLQDQISIKTAQRSTLFKEQQKQYAALAEENED
TDEELKEWKTKFEERIGILEIKISKLEREMNDTETKSSFLKRTINDYILEISKLQTEAEA
HVSLKNERDSTIQKLYAKHNLGFLPNAPFSTDVVLNLTNRIKSRLTDLEKDLQDKKQLNE
IALKTAWDQYMDASDRWKSMEAQKQAKAEIKSGIIKRIKEKEKERDSFEIQISNVDLSHI
DEREKNMRLEVERKTNQLAEREFESNIRQKQSELYSLEQKIKALNREKDIMAGDSEDRVK
LALKKAELDNHKKKHKKIIDEYKDRIRGVLKGRLPSDKDLKKEIAQVLRTLEKEFDDLSS
KSREAEKEVNMLQMKMQEVNNNLFKHQKDMESRKRFIESKLHSMDQQSLGIDTYLKVLET
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERSFSAEEEDEFVKKQRVKAAS
SAEHMKVLASESLNADSFFQQLDKLRMVYEEYIKLGKETIPLSEKNLQELNEELDCKSQA
LDDVLGILAQIKADKDSVEALVLPVETADRLFQEIQTWQKQVDDLEYKLDFRGQGVRTME
EIQLELNGLQTTKDTLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKK
AEEELERLAEEKSQVDLDEKHLKEALGPLSKEKEKLLGDYNDLKVKLSHEYEEQAEGKRN
YQQEVETLLKITAKIKEYYDMKKGERLSELQEKQRVSESQFEGCETRKQEILAELNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDELTRDIESLEERIMKIGGVSTVEAELRKLSQERE
RLLSELNQCRGTMSVYQSNISKNKIDLKHAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYRVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNVESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVSKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtggacaagatgttaatcaaaggaatccggagcttcgaccccgagaacaag
cacgtcatcactttcttcaagcctttaaccttaatcgtcggcccaaatggcgccggcaaa
actaccattatagagtgcttgaagctttcttgtactggagaattgcccccaaatgccagg
tctggtcatagcttcgttcatgatcccaaggttgcaggagagacggagacaaaggggcaa
attaagctccggttcaagacagctgcaggcaaggatgttgtatgcataaggtcttttcaa
ctgacccaaaaggcatcaaagatggagtataaagcaattgagagtgtgctgcaaacaata
aatcctcacactggagagaaagtttgcctgagctatagatgcgctgatatggatagggaa
atacctgctttaatgggtgtttctaaagccattttagaaaatgttatatttgtacaccaa
gatgaagccaactggccattgcaggatccttctacactgaaaaagaagtttgatgatatc
ttttcggctaccaggtatacaaaggcattggaggttattaagaaacttcacaaggatcag
gctcaagagataaaaagttataagctgaagttggagaatcttcagaccttgaaagatgct
gcatataagcttcgggaaagcatttctcaggaccaagaaaaaacagaatctttgaaaggt
caaatgcaggacttggaaaacagcattcagaatgtggatggtaatattcaccatactgaa
gcaacattgaaagatttacggaaattacaggaccagatatcaataaagactgcacaaagg
agcactttgtttaaagagcagcagaaacaatatgctgcccttgctgaggaaaatgaagat
actgatgaagagttgaaggaatggaaaaccaagtttgaagaaaggattggaattttggag
attaaaattagcaagttggagagagaaatgaatgacacagaaacaaaaagttctttcctg
aagcggactataaacgattatatcttggagatcagcaagctgcagactgaagctgaagct
catgtttccttgaagaatgaacgagattcaactatccagaaactatatgcaaagcataat
ttggggtttcttccaaatgcccccttcagtactgatgttgttttgaacctcacaaatcga
ataaaatcaaggttaacagatcttgagaaagatttgcaagataaaaagcaattgaacgaa
atagctcttaaaacagcttgggatcagtacatggatgcaagtgatcgttggaaaagcatg
gaggctcagaagcaagctaaggctgagattaagagtggcatcattaaacgcataaaagaa
aaagaaaaagagcgggattcatttgaaattcagatatctaacgtcgatctttctcacatt
gatgaaagagaaaagaatatgcgacttgaagttgaaagaaagacaaaccaacttgctgaa
agagaatttgaatcaaatatacggcaaaaacagagtgagctgtatagtttagagcagaag
attaaggctcttaatcgggagaaagatatcatggctggtgattctgaggatagagtgaaa
ctggctttgaagaaggcagagttggataatcataagaagaaacataaaaagataattgac
gagtacaaggatagaattaggggagtgctgaagggcaggcttccatctgacaaagatttg
aagaaggaaattgctcaagtcctcaggacacttgaaaaggaatttgatgacttgagcagt
aaatcccgtgaagctgagaaggaggtaaatatgctgcagatgaagatgcaagaagttaac
aataacctgttcaaacatcagaaggatatggaatcaagaaagagatttattgaatccaaa
ctccactccatggatcagcaatccttaggcattgatacttatctgaaagtgttggagact
gctaaggagaaaagagatgtccagaaaagcaaatacaatattgcagatggtatgcgacaa
atgtttgatccttttgaaagagttgcccgcgctcatcatatttgcccttgctgtgagcgc
tctttctctgccgaagaggaagatgaatttgttaaaaaacaaagagttaaggctgcaagt
tctgccgagcatatgaaagtcttagcatcagaatcattgaatgctgactcattcttccag
cagttggacaagcttcgtatggtttacgaagaatatattaaacttggcaaagaaacaatc
cctctttctgagaaaaatttgcaagagcttaatgaagaactagattgtaaatctcaggcc
cttgatgacgttttaggtattttagcacaaataaaagctgacaaggactcagtagaggcc
ttggtactgcctgttgaaacagctgataggcttttccaagaaatccaaacttggcaaaag
caagttgatgatttggagtacaagcttgattttcgagggcaaggtgttagaaccatggaa
gaaattcagttggagctaaatggattacagaccacaaaggacactttgcagaatgaactg
gagaaattaagagatgaacaaagatacatggagaatgatttatcaaatattcaaataagg
tggcacacattaagggaggagaaagttaaagcagccaacacattacgtgatgttaagaag
gcagaagaagaattggagcgtctggctgaggagaaaagccaagttgatttagacgaaaag
cacttgaaggaggcccttggccccttatctaaggagaaagaaaaattactgggtgactac
aatgatttgaaagttaaacttagccatgaatatgaagagcaggctgaaggaaagagaaat
tatcaacaggaagttgagacactactgaagataacagctaagattaaagagtattatgat
atgaagaaaggagagaggttaagcgaactgcaagaaaagcaacgtgtatcagaatctcaa
tttgagggttgtgaaacaagaaagcaggaaattttagctgagctaaacaaaagtaaagac
ttaatgcgaaatcaggatcaattaagacgaaatattgaggacaatttgaattacaggaaa
acaaaggctgaagtagatgaactgactcgcgacatcgaatcactagaagaaagaataatg
aagattggtggggtttctacagttgaagccgaactgaggaagttatcacaagaaagggag
agacttctatcggagttgaaccagtgccggggaactatgtctgtttaccagagcaatatt
tcaaagaacaaaattgatctcaaacatgcacaatataaggacattgataagcggtacttt
gaccaactaatccaactcaagacgactgaaatggcaaacaaggacctagatagatactac
aatgcacttgacaaagcattaatgcgcttccacacaatgaaaatggaggagataaataaa
attataagagaattgtggcagcagacttacagaggacaggacatagattacataagtatc
cattcagattctgaaggtgccgggactcgatcctatagctacagggtcttgatgcaaact
ggtgatgcagagctagagatgagaggaagatgtagtgctggtcagaaggtccttgcttct
ctaatcatacgattagctctagctgagacattctgccttaactgtggaatattagctcta
gacgagcctactaccaacttagatggcccgaatgtagaaagtcttgccgcagctctcctt
agaattatggaggatagaaaggggcaggagaattttcagctgatagtaattacacatgac
gagcgttttgctcaactaattggtcaacgacagcatgcggaacgatattatcgcgtatca
aaagatgatcatcagcatagtataattgaatcccaggagatatttgattga
DBGET
integrated database retrieval system
