Carica papaya (papaya): 110808362
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Entry
110808362 CDS
T05151
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110808362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpap03041
]
110808362
03009 Ribosome biogenesis [BR:
cpap03009
]
110808362
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110808362
Spliceosome [BR:
cpap03041
]
Complex A
U1 snRNP components
U1 related factors
110808362
Complex B
110808362
Ribosome biogenesis [BR:
cpap03009
]
Eukaryotic type
Pre-60S particles
Helicases
110808362
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110808362
NCBI-ProteinID:
XP_021889535
LinkDB
All DBs
Position
Unknown
AA seq
1025 aa
AA seq
DB search
MPEEALPEIYSFSGGMATAEAAPVSAGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETN
ITQYERPAALPPPLPPGPPPASTPKLAPIPVARTAQQNSVVSQHGQQQTTQVQQAQQMSQ
LPQQHGQAPPQQPGQIIAQASEQQGSQMVQTMQQPAQFIPPQIRPQMMQHPVISQQPGQQ
FPQQQGQPMQQQTLQQMPQQLGQHMVQHQNSQMGQQQGQKYAHTQLQYMSYQQSIFPPGQ
QSLQQQTQLGSQGQQYHNQQEFVTAFPKREEVEFQQGNQTGFSPSHFQQTGAQASQNHHV
GTNSVQMPQTGARMGQSQQFGGPSHNMQQPAPVVQMQPTGSDLAHQQHGPRFQNQMGPGM
MHQQSNASPFGVKKGYEDNLPGRTVNDFYFNANKEGPVMGPQQPNLAGIPLEMRMGGVPV
QNVAPSPAGTLNAVPGHSMHSTYGPAGPPFSNNALIRPPFIGSSDIPNANLSPAELYRQQ
HEVTATGDNVPPPFMTFEAANFPPEILREIHSAGFLSPTPIQAQTWPIALQSRDIVAIAK
TGSGKTLGYLIPAFLLLRKCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTC
LYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKKIDFAQVSLLVLDEADRMLDMGFEP
QIRKIVNEIPPRRQTLMYTATWPKEVRRIASDLLINPIQVNIGSVDELAANKAITQYVEV
VPQMEKERRLEQILKAQERGSKVIVFCSTKRLCDQLARTVGRNFGAVVIHGDKSQGERDW
VLNQFRCGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSY
TFFSEQDWKYASDLVKVLEGANQHVPPEVREMALRGAPSFGKDRGAMSRFDSGGHGGRWD
SGGRGGMRDGGFRGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGGFGGRGGIRGDSFPGRG
NRGRGFGGPGGHNNWGRNERGLHDRHGNVDGRGRGRGRGRFDNRRDIVDRSRGRSYSRSP
DRVRT
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagaagctctccctgagatatattcattttctggaggaatggcaacagctgaa
gcggctccagtctctgctggtccacggtatgctcctgatgatcccactcttccacagcct
tggaagggactgattgatgggagcaccggtcttctttactactggaatccagaaaccaac
attactcaatatgaaagacctgctgctttacctccaccattgccacctggtcctcctcct
gcttctacccctaagctggctcccattccagtagctcgtacagcgcaacagaactctgtg
gtatctcagcatggtcagcaacaaactacacaagttcagcaggcgcaacaaatgagccag
ttgcctcaacagcatggtcaagcaccacctcagcagcctgggcaaataattgcacaggct
tctgagcagcagggttcacaaatggtacaaactatgcaacagcctgcccaatttattccg
ccgcaaataagacctcaaatgatgcagcatccagttatttctcaacagccgggacagcag
ttcccacagcaacagggccagccaatgcaacagcagactcttcagcagatgccccagcag
ttaggacagcacatggtgcagcatcaaaactctcagatgggacaacaacaaggccagaag
tatgcacacacacagctgcagtacatgtcatatcagcaaagtatatttccaccagggcaa
caaagtttgcagcagcagactcagcttggttctcagggccagcaatatcacaaccaacaa
gagtttgttactgcattcccgaagagagaggaagttgagtttcaacaaggcaaccaaact
gggttttctccatctcattttcaacaaacaggtgctcaagcctctcaaaaccaccatgtt
ggaactaattcagttcagatgccacaaacaggtgcacgcatgggtcaaagtcagcagttt
ggtggcccttcccacaatatgcaacagcctgcccctgtggttcagatgcagccaactggc
agtgatttggctcaccagcaacatggtcctaggtttcagaaccagatgggcccaggaatg
atgcatcagcagtctaatgcttctccttttggagtaaagaaaggttatgaggataattta
cctggtagaactgtaaatgacttctacttcaatgcaaacaaggaaggaccagtaatgggg
cctcagcaacctaatcttgcaggaattccactggagatgcgaatgggtggggttccagtt
caaaatgttgcacccagtcctgctggtactttgaatgctgtaccagggcattccatgcat
tccacatacggtcctgctggtccgccattttcaaataatgctttgatcagacctcctttt
attggatcttcagatattccaaatgctaacctctctcctgctgaactctatcgtcaacag
catgaagtaactgcaacgggtgacaatgttccacctccattcatgacatttgaggctgct
aattttcctccagagatattgagagagatacattctgctggcttcttgtctcccactcca
atccaggcacaaacatggcctattgctctacaaagtagggatatagtagcaattgccaaa
actggttctggtaaaacattgggctaccttattcctgcattccttcttcttagaaagtgc
cgtaataatcctcagaatggcccaacggtgttggttttggctccaactcgagaacttgct
acacaaatacaggatgaggccattaaatttggccgatcttcaagggtctcatgcacatgc
ttgtatggtggagctccaaagggccctcagttgaaagaactagaccgaggggcggatatt
gtagtggcaacacctggtcgcctaaatgacatcctggaaatgaagaagattgactttgca
caggtttcacttcttgtcctggatgaggcagatcgaatgcttgacatgggttttgaaccc
cagatccgtaagatagtgaatgagatacctccacgccgacaaactcttatgtacacagca
acctggcccaaagaagtaaggagaatagcaagtgatcttctcatcaaccctatccaggtg
aatattggcagtgttgatgagcttgcggcaaacaaggctataacacagtacgttgaagtt
gtccctcaaatggagaaagagaggcgcttagagcagattctcaaggcccaagaacggggt
tcaaaggttatagttttctgttctacaaagaggctgtgtgaccagcttgcacgtactgtt
ggccgtaactttggggctgttgtgatacatggagacaagtctcaaggtgagagagactgg
gttttgaatcagttccggtgtgggaagtcgccaatattagttgccactgatgtcgctgcc
cgggggcttgatatcaaggatataagggtggtgataaattatgatttccctactgggatt
gaggactatgttcaccggattggtagaaccgggagagctggtgcgactggagtgtcatac
accttcttctctgaacaggattggaaatatgcatctgacttggttaaagtcctagagggg
gctaaccagcatgtgcctccagaggtgcgcgagatggctttgcgtggtgcaccaagtttc
ggaaaggatcgaggtgctatgagccgttttgattctggtggtcatggtggccgttgggat
tctggaggtcgtggtgggatgagggatggtggtttccggggccgtggtggaatgagggat
ggtggttttgggggccgtggtggcatgagggatggcggttttggcggacgtggtggcatg
agggatggcggttttggcgggcgtggtggtatcagaggtgattcatttcctggacgtgga
aacagaggacggggatttggcggccctggtggtcataacaattgggggaggaacgaaagg
ggcctgcatgatcggcatggtaatgtagatggacgtggacgcggacgcggacgcggcaga
tttgataatagaagagatattgttgataggagtagaggcagaagttatagccgtagtcct
gatcgtgttcgtacgtga
DBGET
integrated database retrieval system
