Carica papaya (papaya): 110808425
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Entry
110808425 CDS
T05151
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03420
Nucleotide excision repair
cpap04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110808425
09124 Replication and repair
03420 Nucleotide excision repair
110808425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpap04121
]
110808425
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110808425
Ubiquitin system [BR:
cpap04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110808425
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
110808425
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SPT8
NBCH_WD40
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Nup120_160
WD_LRWD1
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
110808425
NCBI-ProteinID:
XP_021889607
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MWREIGGREAGKIRPNSFVNRIKSDRISSLQLSNHKEIVSPHRGSVNSLQVDLTEGRYLL
SGASDSSAAVYDVQRATDYEGGGLIAKHKCIFSVDKQHEHGHKYAVSSAIWYPIDTGLFI
TGSYDHYIKVWDTNTTQVVMNFKMPGKVHRTAMSPLATSHMLIAAGTEDVQVRLCDIHSG
AFSHTLSGHRDGIMTVEWSTSSEWVLITGGCDGAIRFWDIRRAGCFLLLDQSRSQLGRRP
PLLDHSVQNKVSVLKAVSASQNLHAKPKPPHRKSANGHAVKESYIGRIPAKGSTRQRLHP
GMLSTLDRATAHYGAVTGLKITDDGMYLLSAGSDSRIRLWDVESGCNTLVNFETARLQTS
KAIQLATNHNSALAFVPCMTTVKAFDIWSGKTSLTLRGHYESVNCCWFNSQDQELYTGGN
DRKILAWSPARLISKDMVYTMFPAKIRMIGAIDTHVCIHLFRRF
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtggagggaaattggaggcagagaagcggggaagatccgcccaaattctttcgttaat
cgcattaaatccgatcgaatttcctctcttcagctctccaatcacaaagaaatcgtttct
cctcacagaggctccgttaattcccttcaggttgatttaacagagggacgttatctgttg
tccggtgcatctgattcatcagctgctgtttatgatgttcaacgggccacagattatgaa
ggcggtggccttattgcgaagcacaagtgcatattcagtgtcgacaagcagcatgaacat
ggacataagtatgcagtctcctcggccatatggtatcctattgacactgggttgtttatc
acaggttcatatgatcattacattaaagtctgggatactaataccacacaggtggttatg
aatttcaaaatgcctggaaaagttcacaggacggccatgtctccattggcaacatctcac
atgctaattgctgctggaactgaagatgttcaagtgcgcctttgtgatattcattcaggg
gcattttctcacacactgtctggtcaccgtgatggcattatgactgtggaatggtctact
tccagtgagtgggtcttgataacggggggatgtgatggtgcaatacgtttttgggacatt
agacgtgctggatgttttcttcttctggatcagtcccggtctcagcttgggagacggcca
cctcttctagatcactcagtccaaaacaaggtttcagtattaaaggccgtgtcagcaagt
caaaatttgcatgcgaaacctaaaccgccacataggaaatctgcaaatgggcatgctgtg
aaagaatcatatattggtcgaattcctgccaagggatctactcggcagagattacatcct
ggaatgttgtctactctggatagagcaactgctcattatggtgctgttactggtcttaaa
ataactgatgacgggatgtatctactaagtgcagggtcagattcaagaattagattgtgg
gatgttgaatctggttgcaacacacttgtcaactttgaaactgcacgtctacaaactagc
aaagcaattcagttagctactaatcataattcagcgcttgcttttgtcccgtgcatgaca
actgtgaaagcatttgacatttggtcaggaaaaacatctctgacacttcgtggccactat
gaatctgtgaactgttgctggtttaattcacaggatcaggaactgtatacgggtggcaat
gatcggaaaattcttgcctggtcacctgctagactgatttccaaggatatggtatacacg
atgttcccagccaagatcaggatgattggagcgattgacacacatgtctgcatccatttg
ttcaggagattttaa
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