Carica papaya (papaya): 110809608
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Entry
110809608 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110809608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110809608
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110809608
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110809608
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110809608
U7-dependent histone pre-mRNA processing factors
110809608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
110809608
NCBI-ProteinID:
XP_021891175
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MASLKRRDLPVSREGDQLIITPLGAGNEVGRSCVYMSFKGKTILFDCGIHPAYSGMAALP
YFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS
KVSVEDMLFDEQDISRSMEKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV
LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHSTISQGG
RVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCMAVYQTYILSMNERIR
NQFANSNPFIFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNACVI
PGYVVEGTPAKTIINEPKEVTLMNGLAAPLNMQVHYISFSAHADYAQTSTFLKELMPPNV
ILVHGEANEMGRLKQKLLTEFTDGNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPQA
GDTVSGILVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGIFGVIKHRLEKIYESV
ESSSDEESGVPTLRVHDRVTVKHESDKHVSLHWTSDPISDMVSDSIVALILNISREGPKV
VVDSEAVESEEENKKKIEKVIYTLLVSLFGDVKLGEDGKLVICVDGNVAHLDKQNGDVES
ENEGLKERVRTAFRRIQSAVKPIPLSASS
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcttcactaaaaagacgggatctacctgtatcaagagaaggggatcaactaattata
acccctttaggtgctggcaatgaagtgggtcgatcctgtgtttacatgtctttcaaaggg
aaaaccatattgtttgactgtggaattcatcctgcttactcgggcatggctgctttacca
tactttgatgaaattgatccctcaacaatagatgtgcttcttatcacgcactttcacttg
gatcatgcagcttccttaccttactttctggagaagacgacattcaagggtagagttttt
atgactcatgcaacaaaagctatctacaagttgctattaacagattatgtaaaagtgagc
aaagtttcagttgaagatatgttgtttgacgaacaagacattagtcgctctatggaaaaa
attgaggttattgacttccatcaaactgtagaagtaaatggcattaaattctggtgctac
actgctggccatgttctgggtgctgccatgttcatggttgatatagctggtgttcgggtt
ctctacactggagattattctcgtgaagaagatcggcatctccgtgctgctgagctccca
cagttctcccctgatatatgtatcattgaatccacttatggtgttcagctccaccaacct
cgccacattcgggaaaagcggttcactgatgttatccattcaaccatttctcaaggtggt
cgtgttctaatcccagcatttgccctcggccgtgctcaagaacttctcctgatactcgat
gagtattgggcaaaccatcctgagctacataatattcctatttactatgcttctccgctt
gcgaaaagatgtatggccgtgtaccagacgtacattctttccatgaacgagaggatccgt
aaccagtttgcgaactcaaatcccttcatattcaagcacatttcccctttgaacagcatt
gatgattttagtgatgttggtccatctgtagttatggcaagtcctggtggacttcaaagt
ggattatcccgacaactatttgacatgtggtgttctgataagaaaaacgcttgcgtcatt
ccgggttatgttgttgaagggacaccggcgaagaccataatcaatgagcccaaagaagtt
actctcatgaatggcctggctgcacctctcaatatgcaagtacactacatatctttctct
gcccatgcagactatgctcagacaagtacatttttgaaggagctaatgcctccaaatgtc
attcttgttcatggggaagcaaatgaaatgggtagacttaaacagaagcttttaactgag
ttcactgatggcaacaccaaaatcataactcctaaaaattgccagtctgttgagatgtac
ttcaactcagagaaaatggcaaaaaccattgggagactggctgaaaaaaccccacaagca
ggtgatactgttagcggtattctggtgaaaaaaggtttcacgtatcagataatggcaccc
gatgatctccatgttttctcacagctgtcaacagcgaatgttactcaaaggattactatc
ccatacacaggtatatttggagtgataaagcatcgcctggagaaaatatatgagagcgtg
gaatcttcaagtgatgaagagtctggggttccaacattgcgagtgcatgatcgagtgaca
gtgaagcatgagtcagataagcatgtttcactgcattggacatctgatccaataagcgat
atggtgtcagattcaattgtggctttgattcttaatatcagtcgagaaggtcccaaggta
gtagttgattcagaggctgttgaaagtgaggaagaaaacaagaagaagatagaaaaggtt
atttacacgcttcttgtttcgctctttggagacgtaaagttgggagaggacgggaaacta
gtaatatgcgttgatggcaatgtggcacatctcgataaacagaatggggatgttgagagc
gaaaatgaaggtctcaaggaaagagtgaggactgcttttcgacgcattcagagtgcagta
aagccgattcctctgtctgcatcatcataa
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