Carica papaya (papaya): 110809693
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Entry
110809693 CDS
T05151
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
cpap
Carica papaya (papaya)
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110809693
03036 Chromosome and associated proteins [BR:
cpap03036
]
110809693
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
110809693
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110809693
Chromosome and associated proteins [BR:
cpap03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
110809693
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
PhoH
DEAD
AAA_22
AAA_16
TRAPPC13_N
ATPase_2
SLFN-g3_helicase
UvrD_C_2
Helicase_RecD
AAA_5
Cep192_D4
AAA
Motif
Other DBs
NCBI-GeneID:
110809693
NCBI-ProteinID:
XP_021891274
LinkDB
All DBs
Position
Unknown
AA seq
905 aa
AA seq
DB search
MESGETLNALRSYGFRENEVVDIFSFLSRNLAFLRLINFSVVSLAMGSTKRNSWEEEYFV
MKEKGEIGFIDFDEDQSITSYNLRDEGPVSISIPFPLVQGKPQSVVVGETAKCSITLQNT
TSDSVELWEIKIYASNPENTFTLSLIEPPAPNCLELYSLEDRVLEPHDTLTIWLSCKPKE
IGLHTSVVHFEMNDDRFERMVFLLAEDAVSQSLVSSRPYLRDPRRKQFAVDKYVSSPRPA
TATHQGLKHKLPEYPIPADIRELIENKETPEVVTQELGKENYVSFFSTLLIMEELELERE
MRNYTMNSVTMKKKGTWLLALEIPGLAEKRPSLLPGDHVFVKHASKYFDTNYVYQGFIYH
VEADEVVLRFADEFHGHHRNGNLFDVSFTYNRVNMRRQYQALQAAATLDVDILFSSQLTE
RRFVKTVPFTSFTGFLNEEQKQAIKMITGCKGAPPYVIYGPPGTGKTRTLVEAILQIYET
RKNSYTLVCAPSNSAADHILEKLISTEAVQVRDTEIFRLNATSRAYDDVQPAHIRFCVFE
DSIFRCPPLMALKHYRIIISTYMSSSLLYAQGLKRGHFSHIFLDEAGQASEPESMVPISN
FCGRQTVVIIAGDPKQLGPVSNSKTAETFGLGKSYLERLFESDLYGNGDEFFVTNLVRNY
RCHPAILDLPSKLFYKGELLACKENASASATYSLDFMPNKEFPVLFFGIQGLDEREGNNP
SWFNRIEASKVVNIVKELMASADLREADIGVIAPYRQQVLKIKRVLESWEMHDIKVGSVE
QFQGQEREVIVISTVRSTVKHDEYDKTFYLGFLSNPKRFNVAITRAKSLLIIVGNPHIVC
KDFHWNKLLWYCADNNSYQGCPLPERKELVDESIPIHSSDPDQQFPSETTLQPAVDESEF
SDGWK
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggagagtggcgaaactttgaatgctctgcgatcatatggctttcgggaaaatgaagtg
gtggatatcttctcatttttatctagaaatttggcatttctcagactcatcaacttctcc
gttgtcagtttagcaatggggtcaacaaaaagaaatagttgggaggaggaatactttgtc
atgaaagagaaaggggagattggatttattgattttgatgaggatcagtccataacgagt
tataacctaagggatgagggaccagtgagtatatccattccatttcctcttgttcaaggg
aagccccagtcagttgtggttggagaaactgcaaagtgctcaatcacattgcagaacact
actagtgactcagttgaactttgggagatcaaaatatatgcctcaaatcctgaaaataca
ttcactttgtctcttattgaaccaccggctcccaactgcttggagttatattctcttgag
gatagagttcttgagccccatgatactttaacaatttggttatcttgcaaaccaaaggag
attggtttgcatacgtccgtggtgcattttgagatgaatgatgatagatttgaacgcatg
gtatttctgttagctgaggatgcagtctcccaatcactggtgtcaagcagaccatattta
agagatccaagacgcaaacagtttgctgttgataaatatgtgagcagccctcgtccagct
acagctacacatcaaggattgaagcacaagcttcctgaatatccaattccagcagatatc
agggagttgatagagaacaaggaaactcctgaggttgtcacacaagagttaggcaaggag
aactatgtttctttcttcagtaccctgcttataatggaggagctggaattagagagagaa
atgaggaactacaccatgaattctgtcaccatgaagaaaaaaggaacttggctcctggct
cttgagatccctgggctcgcagaaaagaggccgtcacttttacctggtgatcatgttttt
gtgaagcatgcctccaaatatttcgataccaactatgtataccagggtttcatttatcat
gttgaagctgatgaagtagtcttgagatttgccgatgaatttcacggacaccatagaaat
gggaatttatttgatgtctccttcacttataatagggtgaacatgaggagacaatatcaa
gctctccaagcagcagctactttagatgttgatattcttttttcatctcaattaacagaa
aggagatttgttaagacagtaccatttacttcattcactggtttcctaaatgaggagcag
aagcaagcaattaagatgatcactggatgcaaaggtgctcctccttatgtgatttatgga
ccccctggtacaggaaaaacaaggactttggtggaagcaatcttacagatatatgaaaca
agaaagaatagttacactcttgtctgtgctccatcaaacagtgcagcagatcacatatta
gagaagcttattagcaccgaggcagttcaggttagagacactgaaatctttaggttaaat
gccaccagccgtgcttatgatgatgttcaacctgcgcacattcggttttgcgtctttgag
gattccattttcagatgtcctccactcatggcattaaaacattacaggattatcatttct
acttatatgagttcatctttactttatgcacaaggcctaaagcgtggtcatttctcccac
attttcttagatgaggctggccaagcttcggagccagaaagcatggtaccaatatccaat
ttttgtggaaggcaaacagttgttattattgcaggagatccaaagcagctaggtcctgta
tcaaactcaaaaactgcagagacctttggactgggaaaatcctatcttgaaaggctgttt
gaaagcgatctttatggaaatggagatgaattttttgtcacaaacttggtgaggaactat
cgttgccatcctgcaatcctggaccttccgtcaaagcttttctataaaggggagttgctt
gcatgtaaagaaaatgcttctgcatctgcaacatattccttggatttcatgccaaacaaa
gaatttcctgttctgttctttggtattcaaggtttagatgagagggagggaaataatcca
tcatggtttaatcgaatagaggcaagcaaagttgtcaatatcgtaaaagaactcatggca
agtgcggatttaagggaggcagatattggggttatagcaccttatcgtcaacaggtgctc
aaaatcaagagggtacttgagtcatgggaaatgcatgatattaaggtaggcagtgttgag
cagtttcaaggacaggaaagagaggtcattgtcatatctactgtcaggtcaactgtgaag
catgatgaatatgacaaaaccttctatttgggttttcttagcaacccaaagagatttaat
gttgcaattacccgtgccaagtccttgcttataattgtcggaaatccacacattgtttgt
aaggattttcactggaacaagcttctatggtattgtgctgataacaactcgtaccaaggc
tgccctcttcctgaaaggaaagagttggttgatgagtcaattccgatacattcttcggat
ccggatcagcaatttccttcagaaacgactctgcagccagcggtggatgaatctgagttt
tccgatggttggaaataa
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