Carica papaya (papaya): 110809722
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Entry
110809722 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
110809722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110809722
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
110809722
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
110809722
NCBI-ProteinID:
XP_021891320
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MNRMRTRGDSNRGSKSSGALENVSNQGVNKLLRRVNTRGLSRKRKQEDDFHQCDSIDMPE
SGPEKDENEKEDVDIRVASNASDVRGCSKDVDALLCSGDEMNDSDWEDCPVPVLDNIDSC
PDDSSKGLTIELSELPDPLRERPTRRASAKDKVGSAFLTRIGXSVHKVHLLCLLARGRIT
DNACDDPLIQASLLSLLPSHLLKISELTKLTASNLSPLVNWFHDSFHVTSSASARRSFQS
SLAFALESREGTSEELAALSVALFRALNLTTRFVSILDVASLKPDADKCESSTGSRSGEG
IFNTSTLMVTRQEEVSTSPVNSFLCNENTSICDTSLRGSSKRTSKKPNDSSIAGELKDMT
VDSLACKAQYDISEACSTSKSYSSKRKGDLEFEMQLEMALSSTSVGIHKVDEGSDTKNLK
SDVSDVSPSLKKIKRIQNVDVSISSQGISTAVGSKKVGSPSYWAEVYCSGENLEGKWVHV
DAINAIIDGEAKVEAAAAACKTSLRYVVAFAGGGAKDVTRRYCMKWHKIASKRVNSLWWD
AVLAPLRQLESGATGGAVHLEENSVGSLNDHEKSEASRSCSTIRDTNLPTSAEAFARSSF
VATRSMLEDIELEIRALTEPLPTNQQAYKNHKLYMIERWLKKYEILHPKGPVLGFCSGHP
VYPRTCVQTLRTKERWLREGLQVKANELPAKVLKRSSKLKNVQFAGDDDCGETDSQGNIE
LYGKWQLESLNLPRAVNGIVPKNERGQVEVWSEKCLPPGTVHLRLPRIFYVAKRLGIDYA
PAMVGFEFKNGRSHPVFDGIVVCSEFNDAIIEAYAEEEYKRESEEKKKKEARAISRWYQL
LSSILTRQKLKNRYGEGLSSYASSNRQTVNDKLTQVDSITEGKESQGCEKRDTQDAKFDH
MSSVLNEDHEHVFLKEDQSFDVETSVRTKRCRCGFSVQVEEL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaatgcgtaccaggggtgactctaacagaggaagcaaatcatcgggagcactt
gagaatgtatcgaaccaaggggtaaacaaacttttaagacgtgtgaatactcgtggctta
tcgaggaagaggaaacaagaagatgactttcatcagtgtgattctattgacatgccagag
agtggaccagaaaaagatgagaatgagaaggaagatgtagatattagggtcgcctcaaat
gcgtcagatgttcgaggatgcagtaaagatgtagatgctctcttgtgcagtggggatgaa
atgaacgattcagattgggaagattgtcctgttcctgtgttggacaacatagatagttgt
cctgatgattcttctaaggggttgactattgaacttagtgagttaccagatcctctaagg
gagaggcctactcgtagagcatctgcaaaagataaggtgggttctgcttttctcacaaga
attggctgatctgtgcataaggttcatttgctttgtttacttgccaggggcagaataact
gacaatgcttgtgatgatcctctaattcaggcttccttgctttctcttctaccatcacac
ttattaaaaatatcggagcttacaaaacttactgcaagcaatttatctcctcttgtcaac
tggtttcatgatagcttccatgttacaagttcagctagtgcaaggagatcttttcaatct
tccttggcctttgctcttgaatctcgagaaggcacttctgaggagcttgcggctttatct
gtggcattatttagagctttgaatctgacaacccggtttgtgtccattctggatgttgct
tcgttaaagcccgatgctgacaaatgtgaatcttcaactggaagtagatcgggtgaggga
atttttaacacatcaacattgatggtcacaagacaggaagaggtgtccacatctcctgtt
aactcgtttttgtgcaatgagaataccagtatctgtgacacttctttgagaggttcgtcc
aaaagaacaagcaaaaagcctaacgattcttccattgctggtgagctaaaagatatgaca
gtggattcattagcttgtaaggcacagtatgatatatctgaagcatgctctacaagtaaa
tcttatagttcaaagaggaaaggggatcttgagtttgagatgcagttggaaatggcactt
tcttcaacatccgttgggattcataaggttgacgaaggatcagatacaaagaatctgaaa
agtgatgtgtcagatgtctctccatcacttaaaaagataaaaagaattcaaaatgtggac
gtttcaatatcttctcaaggaatttcaactgctgttggttcaaaaaaggtaggatctcca
tcatactgggctgaagtatattgcagtggagagaacttggaagggaagtgggtccatgtt
gatgctatcaatgcaattatagacggagaagcgaaagtggaagccgcagctgcagcctgt
aaaacatctttgagatatgtagttgcttttgctggtggaggagctaaagatgtgacccgc
aggtactgcatgaaatggcacaagattgcatcaaaacgggtaaattcactttggtgggat
gcagtattggcaccattgaggcagttagagtcaggagcaactggaggtgctgttcatctt
gaagaaaactctgttggttccttgaatgatcatgagaagtcagaagcatcaagatcttgt
tctacaattagagataccaatttaccaacttctgctgaggcctttgcaaggagctctttt
gttgccaccaggagcatgcttgaagatattgagttggaaattagggccctaactgagcct
cttccgaccaaccagcaggcatacaagaaccataaactgtacatgattgaaagatggctt
aagaagtatgagatacttcatccaaagggtcctgttcttggcttttgttctggtcatcca
gtctaccctcgaacttgtgtgcaaacactcaggacaaaagaaagatggctgcgggaaggg
cttcaggttaaagccaatgagcttccagcaaaggttcttaagcgttcttcaaagcttaaa
aatgttcaatttgctggagatgatgattgtggtgaaactgattctcaaggaaatattgaa
ctttatgggaagtggcaactggaatcattgaatttacctcgtgctgtcaatgggattgtg
ccaaagaatgaacgtggtcaagttgaagtatggtctgagaagtgcctcccaccaggaaca
gtgcacttaaggttgccaagaatattttatgtggctaagaggctcggaattgattatgca
cctgccatggttggctttgagttcaagaatggacgttctcatcctgtctttgatggtatt
gtggtttgctctgagttcaatgatgcaataatagaggcatatgcagaagaagagtataaa
agagagtccgaagagaagaaaaaaaaagaagcacgtgccatttctcggtggtatcaactt
ctgtcatctattttaactcggcaaaagttgaaaaaccgttatggggagggtttatcatca
tatgcatccagtaatagacagacagtcaacgataagttaactcaagttgacagcattacg
gagggcaaggaatctcaaggatgcgagaaacgggatacacaggatgccaaatttgatcat
atgtcatcggtgctcaacgaagaccatgaacatgtatttttgaaagaggaccaaagcttt
gatgtggagacctcagtgcgcaccaagcgctgtcgttgtggattctctgttcaagtggag
gaattgtag
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