Carica papaya (papaya): 110809808
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Entry
110809808 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110809808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110809808
03041 Spliceosome [BR:
cpap03041
]
110809808
03009 Ribosome biogenesis [BR:
cpap03009
]
110809808
03016 Transfer RNA biogenesis [BR:
cpap03016
]
110809808
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110809808
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110809808
Spliceosome [BR:
cpap03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110809808
Complex C
U4/U6.U5 tri-SnRNP related factors
110809808
Ribosome biogenesis [BR:
cpap03009
]
Eukaryotic type
Pre-60S particles
Helicases
110809808
Transfer RNA biogenesis [BR:
cpap03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110809808
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
110809808
NCBI-ProteinID:
XP_021891435
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MEEESSSLGKRRSPEKSELSDSPKQESASKRRNLSRTCVHEXAVPSGYTSTKDESVHGTL
SNPVYNGEMAKTYNFELDPFQKVSLACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELHHEFQDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHLHKQP
CHVVYTDFRPTPLQHYVFPMGGIGLYLVVDENEQFREDNFVKLQDTFSKQKLVTKIKGAN
GKASGRLAKGGSGSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQD
EKEVVEQVFTNAIQCLNEEDRTLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL
VKALFATETFAMGLNMPAKTVVFTAVRKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQ
YEKALPDMGNKISKLENEAASLDASGEAEVAEYDKLKLDIAQHEKKMMSEITRPERVLCL
LDTGRLIKIREGGTDWGWGVVVSVVKKPSSGAVITASRGGVYIVDTLLNCSPGSSENGSR
PKPCPPRPGEKGEMHVVPVQLPLISAISKLRLSVPSDLRPLEARESILLALKELATRFPL
GFPKLHPVKDMNIKDPEIVQLVSQIEELEKKLYAHPLHKSQDENQILSFRRKAEVNHEIQ
QLKTKMRDSQLHKFRDELRNRSRVLKKLGHVDADGVVQLKGRAACLIDTGDELLVTELMF
NGTFNDLDHHQVAALASCFIPVDKSSEQINLRTELAKPLQQLQDSARKIAEIQHECKLEI
NVEEYVESTVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAA
AVGEVNLESKFAGASESLRRGIMFANSLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaatcatcttcattaggtaagcggagatcacctgaaaaatcagagctatca
gattctccaaagcaagaatctgcttcaaaaagaagaaatctatcacgcacttgtgtacat
gagnttgctgttccaagcggttatacttctaccaaagacgaatctgttcatgggaccctt
tcaaatccagtgtacaacggggagatggctaaaacctacaattttgagcttgatccattt
cagaaagtatcattggcatgcctcgaaagaaacgagtcggttttggtctctgcacataca
tcagccggtaaaactgcagtggctgaatatgcaattgcaatggcattcagagataagcag
agggttatatatacttcaccattgaaagctttgagtaaccaaaagtatagggagctacat
catgaatttcaagatgttgggttgatgactggtgatgttacactatctcctaatgccagt
tgtttggttatgacaacagagattctgagagggatgctttatagggggtcagaggttttg
aaggaagttgcttgggtaatttttgatgaaattcactatatgaaggatagggaaagaggg
gttgtttgggaagagagtataatatttttgcctccagctattaagatggtttttctttcg
gcaacaatgtcaaatgccacagagtttgcagaatggatttgtcatttgcacaaacagcca
tgccacgtggtgtatacagattttaggccaactccgctgcagcattatgtttttcctatg
ggtgggattggattgtatcttgtggttgatgaaaatgagcagtttagggaggataatttt
gtgaagctgcaggatacattttcaaagcaaaagttggttactaaaattaagggtgcaaat
ggaaaagctagtggaaggcttgcaaaaggcgggagcggctctgggggttctgatatatac
aaaattgtgaagatgataatggaacggaaatttcaacctgtcataatcttcagctttagt
agaagagagtgcgaacagcatgcaatgtctatgtccaagcttgattttaatacacaggat
gagaaagaggttgtagaacaggtttttacaaatgctatacaatgcttgaatgaggaagac
agaaccttacctgctattgagttaatgttgccactacttaagcgaggaattgctgttcat
cattctggccttcttccagttattaaggaattggtagaacttcttttccaggaaggcctt
gtgaaggccctctttgccacagagacatttgcaatggggttaaacatgcctgcaaaaaca
gtcgtgtttactgctgttaggaagtgggatggtgatagtcatcggtatattgggtccggt
gagtatattcagatgagtggaagggctgggcgtcgtggcaaagatgagcgtggtatttgc
ataataatgatcgatgagcagatggagatgaatacactgaaagacatggttttgggtaaa
ccagctcctttagtgagtacattcagactgagttactattctattttgaatttgatgagc
cgtgctgaaggccaatttacagctgaacatgtgataaagaattcattccaccaatttcag
tatgaaaaggctttacctgatatggggaacaaaatctcaaagctggagaatgaagctgct
tcccttgatgcttctggagaggctgaggttgctgaatacgataagttaaaacttgacata
gctcaacatgaaaagaagatgatgtcagaaattacaaggcctgaaagagttctttgtttg
cttgatactggccggctgatcaagataagggaaggtggaactgattggggctggggagtt
gtagtaagtgttgttaaaaagccttcatcaggtgcagtcataacagcctcacgtggtggg
gtgtatatagttgatactttgcttaattgttcacctggttcaagtgagaatggttcccgg
ccaaagccatgtccaccccgtcctggagaaaagggtgaaatgcatgtggtccctgttcag
ctgcctctgatttctgccataagcaaactcagactgtcagttccttcagatcttcggccc
ttggaagcaagggaaagcatactacttgcactaaaggagcttgcaactcggtttccgcta
ggatttccaaagcttcatcctgtgaaggacatgaatataaaagatccagagatcgtccag
ttggttagtcaaattgaggaacttgagaagaagttatatgctcatccattgcataagtct
caagatgagaatcagatattaagtttccgaaggaaagcagaggttaaccatgaaattcaa
cagcttaagactaaaatgcgtgattcccagcttcacaagttccgagatgaactcaggaat
cgttcgcgtgtcctgaagaagcttggccatgttgatgctgatggtgttgtccagttaaag
ggacgggcagcctgcttgattgacacaggagatgaactacttgttactgagctgatgttc
aatgggactttcaatgatcttgatcaccaccaagttgcagcccttgcaagttgtttcatt
cctgttgacaaatcaagtgagcaaataaatttgagaacagagcttgctaaaccattgcag
cagcttcaggatagtgcgagaaagatagcggagatacaacacgaatgcaaattggaaata
aatgttgaagagtatgtggaatcaactgtgaggccattcttgatggatgtcatttactgt
tggtcaaagggtgcaagttttgcagaagttattcagatgactgacatatttgagggcagt
atcatcagaagtgcaagaaggcttgatgagtttttgaaccagttgcgagctgctgctgct
gccgtgggagaagtcaatttggagagcaagtttgctggagccagtgaaagcctccgcaga
ggaatcatgtttgcaaattctctttatctctaa
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