Carica papaya (papaya): 110809869
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Entry
110809869 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
cpap
Carica papaya (papaya)
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110809869
03036 Chromosome and associated proteins [BR:
cpap03036
]
110809869
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110809869
Chromosome and associated proteins [BR:
cpap03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110809869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HHH_3
HTH_44
Tex_N
Baculo_8kDa
Motif
Other DBs
NCBI-GeneID:
110809869
NCBI-ProteinID:
XP_021891531
LinkDB
All DBs
Position
Unknown
AA seq
1495 aa
AA seq
DB search
MGRNVVSDDEDEVEFEDEDREPVDGDAIEGRDDDDEEDEDEEGQDEYEKDGFIVDDVEEE
EEEEEEEEERQDSDEERQKKKKRRKKKESEDVLDEDDYLLLQDNNINIQKKKFKRLKKAQ
KDSEDGRFGLSDEEFDGSGKVGRTAEEKLKRSLFGDDEGMPLEDMAEEEEPVEEEEDGDI
GEDDEMADFIVDEEEVDEHGAPVRRRKLKKKKSRQAPGVSSSALQEAHEIFGDVDELLQL
RKQGLDSSEWKERRLEDEFEPIVLTEKYMTEKDDQIRMTDIPERMQISEESTGTPPTDEV
SIVEESSWIYNQLTTGSVPLLKQISGGKDLSINKDDITKFLELHHVQKLDIPFIAMYRKE
QCLSLLTDPDQGEIDDNNVEKSERNPTIKWHKILWMIRDLDRKWLLLQKRKSALLSYYNK
RFEEESRQIYDETRLNLNQQLFKSILKSLSDAETEREVDDVDSKFNLHFPPGEVGVEGQY
KRPKRKSQYSICSKAGLWEVASKFGYSAEQIGLHLSLEQHVSDELEDAKETPEEMASNFT
CAMFETPQAVLKGARHMAAVEISCEPCVRKYVRKEFMDNAVVSTSPTADGNMAIDSFHQF
AGVKWLREKPLNSFEDAQWLLIQKAEEEKLLQVTFKMPEESLNKLLKEFGIYLSHGVSKS
AQLWNEQRNLILKDALFGFLLPSMEKEARSLLTSRAKSWLLLQYGNVLWNKVSVGPYQKK
EVDINSDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNINDQQRKK
NDQQRVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELGIVY
GDESLPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCP
SENFLTPDEKYGMVEQVMVDVTNQVGLDINLATSHEWLFAPLQFISGLGPRKAASLQRSL
VRAGTIFTRKDFVTVHGLGKKVFVNAVGFCRIRRIGLAASSSQFIDLLDDTRIHPESYGL
AQEMAKDVYEEDVRGDTNDDEDAEMAIEHVRDRPSLLKSLYLPNYLKSKNRENKRETFYD
IRRELMHGFQDWRKQYKEPSQDEEFYMISGETEDTLAEGRLVQVSVRRVQGGRAICALDS
GLTGMLMKEDYSDDWRDIAELSDRLHEGDILSCKIKSIQKNRYQVLLVCKDSEMRSNRHQ
HVLNLDPYYHEDQNSLQIQQDKARKEKELAKKHFKPRMIVHPRFQNITADEARAYLSDKE
PGESIIHPSSRGPSYLTLTLKVYDGVYAHKEIVEGGKEHKDITSLLRIGKTLKIGENTFE
DLDEVMDRYVDPLVSQLKAMLNYRKFKMGTKVEVDELLRIEKSENPSRIVYSFGISHEHP
GTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPVNESAPSIRSV
AAMVPMRSPATGGSSGAAVGSSWGGSTNDGGWRAQSFDRDRSSTPGSRSGKLLIY
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atggggagaaatgtagtttctgatgacgaagacgaggtagagtttgaggacgaggacaga
gagccagtggatggagacgcaatcgagggacgtgacgacgacgatgaggaggatgaagac
gaggaagggcaggatgaatatgagaaggatggatttatagtagatgatgttgaagaagag
gaggaagaagaggaggaggaggaggagagacaagacagtgatgaggagaggcagaaaaag
aagaaaagaaggaagaaaaaggaatctgaggatgttcttgatgaagatgattatttgctt
ctccaggataacaatattaacattcaaaagaaaaagttcaagaggttgaagaaagctcag
aaagattcggaagatggtcgatttggcttatctgatgaggaatttgatgggagtggcaaa
gttggacgaactgctgaggagaagctcaaaagaagcttatttggtgatgatgaaggtatg
ccgcttgaagatatggctgaagaagaggaaccagtagaagaggaagaggatggagacatt
ggagaagatgatgaaatggcagattttattgtggatgaagaagaggtggatgaacatggt
gctcctgtcagacggaggaagttgaagaaaaagaagtctaggcaggcaccgggagtttct
tcatctgctttgcaggaagctcatgaaatatttggtgatgttgatgaactcctgcaactt
cgaaagcaaggtttagattctagtgaatggaaagaaaggagacttgaggatgagtttgaa
ccaatcgttcttactgaaaagtatatgacagagaaggatgatcagattcgcatgactgat
attccagaaagaatgcagatatctgaggaaagcaccggtactccccctactgatgaagtt
agcatagtggaagagagtagctggatatacaatcaacttacaactggttcagtaccttta
ttgaagcagattagtggagggaaagatttgtctataaacaaggatgacattactaaattt
ttggaattacatcatgtgcagaagttagatattcccttcattgctatgtatcggaaggag
cagtgcctgagcctactgacagatcctgaccagggtgaaattgatgataataatgttgaa
aaatctgaaagaaaccctacaataaagtggcacaagatactttggatgattcgggacttg
gacagaaagtggttacttcttcagaagcgtaaaagtgcacttctttcgtactataataaa
agatttgaagaagaatcccgtcaaatttatgacgaaacaagacttaatttaaaccagcag
ctttttaaatcgattcttaagtctttaagcgatgcggaaacagaaagggaggttgatgat
gttgactcaaaattcaacttacatttccctccgggtgaggtaggtgttgaaggacaatat
aagaggcccaagaggaaatcacaatatagtatctgcagcaaggctggcctttgggaagtc
gcaagcaagtttggttacagcgctgagcaaattggattacatttatctttagaacaacat
gtgagtgacgaattggaggatgctaaggaaacaccagaggagatggcttcaaactttaca
tgtgcaatgtttgaaactcctcaagctgtccttaaaggggccaggcacatggctgctgtt
gaaataagttgtgagccatgcgtcaggaagtatgtccggaaggagttcatggacaatgct
gttgtatcaacaagtccgactgcagatggaaacatggccatagattcgtttcatcagttt
gcaggggtgaagtggttgcgtgagaagccgttgaacagttttgaggatgcacagtggctc
cttatccaaaaggctgaagaggagaagcttcttcaagtcacctttaaaatgccagaagag
tctctaaataagttacttaaggaatttggcatttatcttagtcatggcgttagcaaatct
gctcaattgtggaatgagcaaaggaatttgatcctgaaggatgccctttttggtttcctt
ttaccttcaatggagaaagaagcaagatccttgttaactagcagagctaaaagttggtta
cttttgcagtatggaaacgttttatggaataaagtttctgtagggccctatcaaaagaag
gaagtggatataaactctgatgatgaagctgctccaagggtcatggcttgctgttggggc
cctggaaagccagcaaccacctttgtaatgttagattcatctggggaggtgcttgatgtg
ctttacactggatctctcacgttacggtctcaaaatattaatgaccagcagcgtaagaaa
aatgaccaacaacgagttttgaaatttatgacggaccaccagccgcatgttgttgttctt
ggagctgtgaatttgtcttgtactcgactgaaggatgatatttatgagatcatcttcaag
atggtggaggaaaatcctcgggatgttgggcatgagatggatgaactgggcattgtatat
ggggatgagtctcttccccgactctatgaaaattctcgaatttcatctgatcagttacct
gggcagtcaggcattgtcaagcgggctgttgctcttgggcgttatcttcagaatccattg
gccatggttgcaacgttgtgtggaccaggaagggaaatcttatcttggaaactttgtcct
tctgagaactttctcactcctgatgagaaatatgggatggttgaacaggttatggtagat
gtgacaaaccaggtgggcctcgacataaacttggctacaagtcatgaatggttatttgct
cctttacaattcatctctgggcttgggcctagaaaggcagcatctctgcagcgatccttg
gtaagagctggaacaatttttacccgaaaggattttgtgacagtccatggacttggtaaa
aaggtgtttgtcaatgcagttggcttttgccgcatccggcgaattgggctggctgctagc
agtagccagttcattgatttgttggatgacactagaatacatccagaatcttatggtctt
gcacaagagatggcaaaagatgtctatgaggaagatgtccgaggtgatacaaatgacgac
gaggatgcagagatggcaatagagcatgttagagaccggcctagtttacttaaaagcctt
tatcttcctaattatctgaaaagcaagaatcgtgagaataagagagaaactttttatgat
atacgaagagaattaatgcatggttttcaagattggcgcaaacagtataaagaaccaagt
caagatgaggaattttatatgatatcaggtgaaactgaagatacactagctgaaggtaga
cttgtgcaggtctctgttcggcgggtacaaggggggagagctatctgtgcactagattct
ggattgactggtatgcttatgaaggaagactattcggatgattggagggatattgctgag
ttgtctgataggcttcatgaaggtgacattttgtcctgcaagatcaaatcaattcaaaag
aataggtatcaggtgttgctcgtttgtaaagatagtgagatgagaagtaaccggcatcag
catgtcctgaatcttgatccgtactaccatgaggatcaaaacagtctacagattcaacaa
gataaagctcggaaagagaaggagcttgcaaagaaacacttcaagcctaggatgattgtt
catcctcgctttcagaatataacggctgatgaagcaagagcgtacttgtccgacaaggag
cctggtgagagtatcattcatccaagttctcgtgggccttcttatttaactttgacactc
aaagtttatgatggagtgtatgctcacaaggaaatagttgaagggggaaaggagcacaag
gacatcacgagcttgcttcgtattggaaagacattaaaaattggggagaacacttttgag
gacttggatgaggttatggatcgatatgttgatcctttggtgtctcaactcaaggcaatg
cttaattatcggaaattcaagatgggaaccaaagtagaagttgatgagctcctaaggatt
gagaagtctgagaatccttcaaggattgtttatagttttggcatatcacatgagcatcct
ggaactttcattttaacttatatacggagcacaaatccccaccacgagtatattggtttg
tatcccaagggattcaagttccggaaaagaatgtttgaggacattgatcgtcttgtggct
tatttccagaggcatattgatgaccctgtgaatgaatcagcaccatcaattaggtcagtt
gctgctatggtaccaatgcgaagccctgcaaccgggggctcttccggagcagctgtcggt
agcagctggggtggttcaactaatgatgggggctggagggcccaatcttttgacagggat
cggtcctctacacccgggtcaagatcaggtaaacttctaatatattga
DBGET
integrated database retrieval system
