Carica papaya (papaya): 110810013
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Entry
110810013 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110810013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110810013
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110810013
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110810013
mRNA degradation factors
3'-5' decay
Ski complex
110810013
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
DEXQc_Suv3
ResIII
Helicase_C
AAA_22
DUF1922
Motif
Other DBs
NCBI-GeneID:
110810013
NCBI-ProteinID:
XP_021891732
LinkDB
All DBs
Position
Unknown
AA seq
1297 aa
AA seq
DB search
MDRIQAANELAFRVGFSGHSGHLRVEPVYTVERVDPVRSLPDFILPPAFPRDTPESIKEH
IEEEYLLPRLDPDEFSAEKDGRQWKFDWFGRAEVPLEPSVPRSVMVPKWELPFRRQKKGS
EKGIWEPTSVQVDVSELMVGDEDPGPFQRAVGPSADFVRGGINNRPFRPGGLENSSSLER
ILPDGALNGEWVREILNGGPAQTVPPSFKRGLNLGNIKEYPRNWSVYEDQSSLNRTADEK
LSELSVQFDDLFKKAWEEDVVAEYGRDGDLSETESSVSDAEASKIDVNTNVLESELSPLD
EILSVEREAPSPMVDGTNDGSGQPQKEVWAVSGGSEGIADHFHELVPEMAFDFPFELDKF
QKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFC
GKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGV
VWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKQIRVTGTSKRPVPLEHCLFYSG
ELYKVCESESFIPQGLKAAKDACKKKNPVSVSGGRYVGSSAAHDGTRSQKRENPNRSKQS
KHSGSINSGNISGRGGGNQNNGSGHNNWGLRRSEASVWLLLINKLSKMSLLPVVIFCFSK
NRCDKSADSLYGTDLTSSSEKSEIQVFCDKAFSRLKGSDRNLPQVVRVQSLLRRGIGVHH
AGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRSLMVATRLESQFRL
TYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQQTKVECIKGEPAIE
EYYEMCAEAEKYHNQISKAVMQSPLAQQFLTPGRVVVMKSQSDGDHLLGVVLKGSSASNK
QYIVLVLKPDIPSVSQSPAGGDNKSSNLPQGYFMLPKTKRTFEDEYFSSVASRKGSGAVN
LKLPHHGTAAGVNYEVRGFDNQEFLCICNCKIKVDQVRLLEVVSNAAFSQTAQQLLDLKS
KGVKYPPALDPLKDLKLKDVNLVETYYKWTHLLQKMSTNKCHGCVKLEEHLKLAESISRH
NEEVKSLMFQMSDEALQQMPEFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICT
ECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSKARQRLYLTAMRLGELQAEF
KLSINPEEYAKENLKFGLVQVVYEWAKGTAFADICELTDVPEGLIVRTIVRLDETCREFK
NAASIMGNSALYKKMELASNAIKRDIVFAASLYITGV
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggatcggatccaggcagcaaatgagctcgcttttcgggtcggattctccggtcacagc
ggccacctccgggtcgagccggtttataccgtggagcgtgtcgaccccgtgaggtcgttg
ccggattttatccttcctcctgcatttcctagagatacgcctgaatcgataaaagagcat
attgaggaggaatatctcttgccaagattggatcctgatgaattttctgcagaaaaagat
ggaaggcaatggaaatttgattggtttgggagagcagaagtaccactggagccatctgtg
ccccgctccgttatggttccaaagtgggagttgccgtttaggcgccagaagaagggatcg
gagaaaggaatatgggaacccacttcagtgcaggtggatgtgtcagaattgatggtaggc
gatgaagatccaggtccctttcaacgtgctgttggaccctcagcagattttgtgagagga
ggcataaataaccgcccttttcggccaggaggtttggagaattcctcatctttagagaga
atccttcctgatggtgctctgaatggtgaatgggtacgtgagatcctaaatggtggccct
gctcagactgttcctcccagctttaagcggggattaaatctgggtaatattaaggaatat
ccacgcaattggagtgtttatgaggaccaaagttcactcaataggacagctgatgaaaag
ttgagtgagctatcggtgcaatttgatgacctgttcaaaaaagcttgggaagaagatgtg
gttgctgaatatggcagggatggtgatttgtcagaaacagagtcctctgtgtccgatgca
gaggcaagtaagattgatgtgaacacgaatgtacttgagtctgaattatctccattggat
gagattttgtcagttgaaagagaggcaccatccccaatggtggatgggactaatgatggc
agtggacagccgcagaaggaggtctgggcagttagtggtgggagtgaaggaattgctgat
cactttcatgaacttgttcctgaaatggcctttgatttccccttcgaattggataaattc
caaaaagaggctatctattatctggaaaagggggactctgtttttgtggcagcccataca
tcagctggaaagacagtggttgcagaatatgcatttgctttggcaacaaaacactgcact
agagctgtatatactgctcctattaagaccatcagcaaccaaaagtatagagacttttgc
ggaaagtttgatgtaggtcttcttactggtgatgttagcttgaggccagaggcttcttgt
ctcatcatgaccactgagatattgagatcaatgctttaccgtggtgccgatatcatacgt
gatattgaatgggttatatttgatgaagtgcactacgtcaatgatgttgaaagaggtgta
gtttgggaagaagttataatcatgcttccaaggcatataaattttgtcctcctttctgcg
acggtgccaaacacaattgagtttgctgactggattggtcggacaaagcaaaagcagatt
cgtgttactgggactagtaaaagacctgtcccactagagcactgcctgttttattcagga
gaactttacaaagtgtgtgaaagtgaatcttttattccacaaggattgaaagctgctaaa
gatgcatgtaagaaaaagaatccggtttcagttagtggtggaagatatgttggatcttca
gcagctcatgatgggactcgatctcagaaacgtgaaaatcctaaccgtagcaaacagagc
aagcattctggttcaataaattctgggaacatctcagggcgtggtggagggaatcagaat
aatggtagtggccacaacaattgggggttgcgtagatcagaagcttcagtttggttgttg
cttattaacaagctttctaaaatgtcactactgcctgtagttatattctgtttctcaaag
aatcgctgtgataaatcagctgatagtttgtatggaactgatctcactagtagttctgag
aaaagtgaaatccaagtattttgtgacaaagctttttcaagactgaaggggtctgaccgc
aatttacctcaggttgtcagagttcaaagtcttcttcgcagagggattggtgttcatcat
gcagggttgcttcctattgttaaagaagtggttgaaatgcttttctgtcgtggtgtgatt
aaagtattgttctcaacagagacatttgcaatgggtgtcaatgctccagctagaacggtt
gtttttgatactttaagaagtttgatggtagcaactaggcttgaatctcagtttcgacta
acttacataatgatccttcatctcctgcgtgttgaagagttgaaggtggaggacatgttg
aaaagaagttttgctgaatttcatgcccagaagaagcttccagaaaagcagcaattacta
atgcggaaacttgcccaacaaaccaaagttgaatgtattaaaggtgaaccggcaattgag
gagtactatgagatgtgtgcagaagctgagaaataccacaatcagatatcaaaagctgtc
atgcagtctcctcttgcccaacaatttcttacacctggcagagtagttgtcatgaaatca
caatcagatggggatcacttactaggagttgttttgaaaggatcttcagccagtaacaaa
cagtacattgttttagtgctgaaacctgacataccatcagtgtctcaaagtcctgcgggt
ggtgataacaaaagttccaatttaccacaaggttattttatgttaccaaaaacaaaacgc
actttcgaagatgagtatttttcttcagttgcttcgcgtaaagggtcaggtgcagtgaac
ttaaaattaccacaccatggtactgcagctggtgtgaattatgaggttagagggtttgat
aatcaggaatttttatgcatatgcaattgcaagataaaggttgatcaagttaggctcctt
gaagttgttagcaatgctgctttctctcagacagctcagcagctattggatttaaaatcc
aaaggagtcaaatacccaccagccttagatccattaaaagatctgaagttgaaagatgta
aatcttgtggaaacatactacaaatggactcatctattgcaaaagatgtcaacaaataaa
tgccatgggtgtgtaaaattggaagagcaccttaagttagcagaaagtatttctaggcac
aatgaggaagttaaatctcttatgttccaaatgtctgatgaagcacttcagcagatgcct
gaatttcagggccggatagatgttctcaaggaaattggatgcatagatgctgatcttgta
gttcaaattaaaggtcgtgttgcttgtgagatgaattcaggggaggagctgatatgtaca
gagtgcttatttgagaatcaacttgatgacctggagcctgaagaagcagttgcattaatg
tcagcctttgtatttcagcaaaaaaatacatctgagccttctcttactcccaagctatct
aaagcaaggcagagattgtacttgacagcaatgaggcttggggaacttcaagccgagttc
aaactatcaataaacccggaagagtatgcaaaggagaatcttaaatttggtcttgtacaa
gtcgtctatgaatgggcaaagggaactgcatttgccgatatctgtgaacttacggatgtt
cctgaaggcctgatagtgaggactattgtgaggttggacgaaacctgtcgtgaattcaaa
aatgcagcatctatcatgggcaactctgcgctctataagaaaatggaacttgcatcaaat
gccataaagcgcgatattgtttttgcagctagcttgtacatcaccggagtctga
DBGET
integrated database retrieval system
