Carica papaya (papaya): 110810203
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Entry
110810203 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
cpap
Carica papaya (papaya)
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpap01009
]
110810203
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110810203
03041 Spliceosome [BR:
cpap03041
]
110810203
Protein phosphatases and associated proteins [BR:
cpap01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110810203
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110810203
Spliceosome [BR:
cpap03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
110810203
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM
zf_CCCH_4
Nup35_RRM_2
AAA_23
CDK5RAP3
DUF4404
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
110810203
NCBI-ProteinID:
XP_021891983
LinkDB
All DBs
Position
Unknown
AA seq
924 aa
AA seq
DB search
MELKVSSPRQRALSPTDCVSDSEEKEISDEDDDDRNHKHRRRETRSQSLERDGSDQVFAR
PYRKRNKHFENGHSFRENESQANETWRHYNVSPLEKDLSTKFERRRPGLPSYLRGPLDQR
IRANQAFLGDTGSGRGRGRDSGSWTRDSRFGSIEIASQMVQPGPMAPHLFGGRGLPNVST
TQSASWTAFGILPGVPNGGLDTLHSIGLQGTLRPPINSSLNIGIPRQRCRDFEERGFCLR
GDMCPMEHGVNRIVVEDVQSLSQFNLPVSLPSAQLLGPPAGPGPLPSVGAPSTLINNKGA
HSKGSKPGLNNDGLELSDTYPGAAGADFYDPDQPLWNNNGPETSASLAALHSPKIDDIEP
SLDDDRHHGADSEYPIRSTGAMGSQSLSVWGRIGGSKSKLNSKEKIDATLSSSGYFENEA
KMEQEALGSTQGSSRQGKRTIADDAGPKAMDSSLKTQNGAMRNLRKSSQKALRTLFVNGI
PLKSNKKEALLSHFQKFGKVIDIFIPLNSERAFVQFSKREEAEAALKSPDAVMGNRFIRL
WWANRDSIPDDGVPVTPRVMVTGSVLPHQSVVHRGKDNLQPSVPKGNNVHSAEVPXTVPD
LPKPVITNVPKVPPLQKKLETLEQLKEELRKKQEMLDQKRNDFRKQLDKFEKQATGPKGE
PVTEQAAKRLKVGVAAYAAKVSTSMSSDSAAAMVSPHTEVLGDKNNSMENVVSHSQKSNT
AMVLQESTSLKPQSYPLGTLNTPSMINRYKLDNRTASFRVIPPLPTGFADVVVLKGHFSS
YGDLSTVELEELEANDGSNVSEASKNFEVHVTFTTRQAAERAFEYGKCWQGHDLQFTWET
SSNSSIFTGSRERSVSTSKGPVDAEVQPVEESGSVLHQEAATSGNKGPEKAEREGGIKSM
EVHEVLQPSSTPVSREKEPSKVNC
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcatctccgagacagagggctctatctcccactgattgcgtcagt
gattctgaggaaaaggagattagtgatgaggatgatgacgaccgcaaccataagcatcga
aggcgagagacacgatctcaatctttggaaagagacggctctgatcaagtctttgccagg
ccatacagaaagcgaaataaacattttgaaaatgggcattccttcagggaaaatgaatct
caagcaaatgaaacttggaggcattataatgtctccccactggagaaagacctttccaca
aagtttgaaagaagacgtcctggtttaccatcatatctgcgtggaccgttggatcaacga
atcagggcaaaccaggcatttttaggagacacgggttctggtaggggaagaggaagggac
tctggttcctggacacgcgattctaggtttggctctattgagattgcatctcaaatggtt
cagccagggccgatggcgccacatctctttggtggaaggggattgcctaatgtgtcaacc
acacagagcgcatcctggactgcctttggaatacttcctggggtaccaaatggtgggttg
gatacactccactccatcgggttacaaggaacactcagaccaccaattaattcttcatta
aacataggcattcctcgtcagaggtgtagggattttgaggaacgtggattctgtcttaga
ggagatatgtgcccgatggagcatggtgtcaatcgtattgttgtggaggatgttcagagc
ctctcccagttcaaccttcctgtttcacttccaagtgctcagctattggggccgcctgct
ggacctggaccccttccttcagttggtgctccttcaacattgattaacaacaaaggagcg
catagcaaaggtagcaaacctggattgaacaatgatgggttggaactaagtgatacatat
cctggtgcagctggcgctgatttctacgaccctgatcaacccttgtggaataacaatggt
cctgaaacttcggcttcacttgctgcactgcattcacccaaaattgatgacattgagccc
tcattggatgatgatcgtcatcatggtgctgacagtgaatacccaattaggagcactggg
gctatgggttctcagtctctgtctgtttggggtagaattggtggttcaaaaagcaaatta
aattcaaaagagaaaattgatgcaacattaagttcctcaggttattttgaaaatgaagct
aagatggagcaagaggctttaggtagtacccaaggtagctcccgtcaaggaaaacggact
attgctgatgatgctggtccaaaagccatggattcatctctcaagactcagaatggtgct
atgcgtaacttgagaaaatcatctcaaaaggcactgcgaactctctttgttaatggaatt
cctctaaagagcaacaaaaaagaggctcttctttcacattttcaaaagtttgggaaggtc
attgacatttttattccattgaatagtgaacgagcatttgttcaattttcgaagagggag
gaggcagaagctgctcttaaatcacctgatgctgtaatgggtaaccgctttatcaggctg
tggtgggctaaccgtgatagcattcctgatgatggcgtgcctgtaactccgcgtgtgatg
gtaactggttcagttctaccccatcaatctgttgttcatagaggaaaagataatcttcag
ccttctgttccaaagggtaacaatgtccattctgctgaagttcctnccactgtgccggat
cttcctaagcctgtaataactaatgtccccaaggttcctcctctgcaaaagaagctagaa
actcttgagcagttgaaggaggagctccgcaagaagcaggaaatgctggaccagaagcgg
aatgacttccgaaaacagttggacaaatttgagaaacaagctactgggcccaagggggag
ccagtgacagagcaagctgctaagagacttaaagtgggagtggcggcttatgctgctaaa
gtttcaaccagtatgtcttctgattcagctgctgctatggtgtcaccacacactgaggtg
cttggagataagaataattctatggagaatgttgtgtcccacagccaaaaatcaaacaca
gccatggttttgcaggaatccacaagcctgaagccacagagctatccattgggaacttta
aatactcccagtatgataaatagatataagttggacaaccgcactgcttcattcagagtt
attccacctttaccaactggctttgcagatgttgttgtcttgaaaggacatttctcatct
tatggtgatctttctactgtggagttagaagagttagaagctaatgatgggagtaatgta
tcagaggcatcaaaaaattttgaggttcatgtgactttcacaacacgccaagcagctgag
agggcatttgaatatggtaaatgctggcaaggccatgatttgcaattcacatgggagaca
tcaagtaattccagcattttcactggtagcagagaaaggtccgtctccacttctaaggga
cctgtagatgctgaggttcaacctgtagaggaatcaggatctgttctacatcaggaagct
gctacatcaggaaataagggacccgaaaaggcagaaagagaaggtggtattaagtctatg
gaagtgcatgaagttttgcaacctagttcaaccccagtttccagggagaaagagccatca
aaagtcaattgttga
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