Carica papaya (papaya): 110810574
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Entry
110810574 CDS
T05151
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110810574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110810574
03012 Translation factors [BR:
cpap03012
]
110810574
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110810574
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110810574
Translation factors [BR:
cpap03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110810574
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
Rad17
FoP_duplication
Cas3-like_C_2
NACHT
ATPase
Motif
Other DBs
NCBI-GeneID:
110810574
NCBI-ProteinID:
XP_021892463
LinkDB
All DBs
Position
Unknown
AA seq
1039 aa
AA seq
DB search
MSLRRLGASFPCSFCKHSLLLAPLRIDPRLSSFRYRLQISTLAMPHGHNYQGGRRGGGSS
SGRGGGRRGGGGGGGRGGGRGEQRWWDPAWRAERLRQKAAEMEVLDENEWWSKMQQMKNG
GEQEMIIRRNYSRSDQQTLGDMAYQLGLHFHAYNKGKALVVSKVPLPDYRADLDDRHGST
QKEIQMSTETERRVGGLLKNSQGLISNNDSGTTSSVGNKASSIGTKVTDPVSNLGNDSAK
EKLNIELKQKQEKMKASQSAKAMQSFREKLPAFKVRAEFLKAVAENQVLVVSGETGCGKT
TQLPQFILEEEISCMRGAHCNIICTQPRRISAISVAARISCERGESLGESVGYQIRLEAK
RTEQTRLLFCTTGVLLRQLVQDPNLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL
RLILMSATINANLFSEYFGNAPTMHIPGLTFPVAEFFLEDVLEKTHYNIKSEFDNFQGKS
RRTRTESESEKDPLTAVFEELDINSHYSHYGTSTKLSLEAWSASQLDLGLVESTIEYICR
KEGDGAILVFLTGWDEISKLLDKIKANNFLGNLSKFLVLPLHGSMPTINQREIFDRSPPN
KRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRA
GRVQPGVCYRLYPEVIHDAMPQYQLPEILRTPLQELCLHIKSLQLGAVGSFLAKALQPPD
PLSVQNAIELLKTIGALDDMEELTPLGSHLCTLPLDPNIGKMLLIGAIFKCLNPALTIAA
ALAHRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGYKDAKCNGRERAFCWENF
LSPVTLQMMEDMRNQFLNLLSDIGFVDKSKGASAYNQYSHDLEMVCAILCAGLYPNVVQC
KRRGKRTAFYTKEVGKVEIHPASVNAGVHLFPLPYMVYSEKVKTSGIYIRDSTNISDYAL
LMFGGNLIPSKTGEGIEMLGGYLHFSSSKSVLELIRKLRGELDRLLNRKIEEPSFDISVE
GKGVVSAVVELLHSQNVRY
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcgcagactcggcgcttcttttccctgttctttctgcaaacactcattgcta
ttggcgcctctgcgaatagaccccagactttcttcatttcggtatcgccttcagatctca
actctcgctatgcctcacggtcacaactatcaaggcggtcgccgtggcggcggctcctca
tccggtcggggcggaggtcgccgtggaggaggcggaggtggaggacgcggaggcggacgc
ggagagcagcgttggtgggacccagcctggagagctgagcgcttacggcaaaaagcggct
gagatggaagttcttgatgagaacgaatggtggagtaagatgcagcagatgaaaaatgga
ggagaacaggaaatgataataagacgcaattatagtcgctctgaccagcaaactctcggt
gatatggcttatcagctgggccttcactttcatgcatacaataaagggaaagctcttgtg
gttagcaaagtcccattgccagattatcgagcagatctcgacgaccgccatgggtccacc
cagaaagagattcaaatgtctacagaaactgagaggagagtcggaggtcttttgaaaaat
tcacaagggttgatctccaataatgattctggtacgacatcttccgtaggaaacaaagca
tcatcaattggtacaaaagtaacggatcccgtgtctaatctgggaaatgattctgctaag
gagaaactcaatattgaactaaagcagaagcaggaaaaaatgaaggcaagtcagagtgca
aaggcaatgcagtctttcagagaaaaacttcctgcattcaaagtcagagctgagtttttg
aaagctgttgctgaaaatcaggtattagtagtctcaggagagacaggatgtggtaagaca
acacaacttcctcaatttatattagaagaggagatatcatgtatgcggggtgctcattgc
aacataatctgcacacaaccccgtcgcatatctgcaatttctgttgcagctcgaatatcc
tgtgaaagaggagagtctcttggtgaatctgtgggttatcagattcgcctggaagcaaaa
cgcactgagcaaacacgtctgttattctgcacaactggagtattacttcgtcagttggtt
caggaccctaatttgactggtgtgagccatttgcttgtggacgaaattcatgaacggggg
atgaatgaagattttcttttaattattttgcgggaccttctaccacggcgtcccgactta
cgccttattctgatgagtgctaccattaatgccaatctgttctcagaatactttggaaat
gctcctaccatgcacataccagggttgacctttcctgtagcagagttttttctagaagat
gtgctggagaaaactcattacaatattaaatcagagtttgacaacttccaggggaaatca
agaagaacaaggacagaatcagaatctgagaaagatcctttaactgcagtatttgaggaa
cttgatattaattcacactacagccattatggcacatctacaaaactttctcttgaagct
tggtctgcctcacagcttgatttgggtttggtggagtcaacaattgagtacatatgtcgc
aaagaaggtgacggagcaattcttgtattcttgactggctgggatgaaatttcgaaactt
ctagacaaaattaaagcaaacaactttcttgggaaccttagcaagtttctagtccttccc
ctgcacggctcgatgcccacaatcaatcaacgtgaaatttttgaccgttcaccacctaac
aagcggaaaattgttctggcaactaatattgcagagagcagtattaccattgatgatgtt
gtgtatgttatagactgcggaaaggcaaaagaaaccagttacgatgctctcaataagctt
gcttgccttttaccttcatggatttcaaaggcttcagcccatcagagacgaggtcgtgct
ggtcgtgtgcaacctggagtttgctatagactgtatccagaagttatccatgatgcaatg
ccacagtatcaattacctgaaattcttcgaactcctttgcaagaattatgcctgcatatc
aaaagcttgcagcttggagctgttggatcatttttggcaaaggctcttcagccaccagat
cctctttctgttcaaaatgcaattgaacttcttaaaactattggagctttagatgatatg
gaggagcttactccacttggtagccatctttgcactctacctttggacccaaatattgga
aaaatgcttctaattggtgctatttttaaatgcctaaatcctgctttgacaattgcggcc
gctctggcacatcgagacccttttgtcctgccgataaataggaaagaggaggctgatgct
gcaaaaagatcgtttgctggtgactcctgcagcgaccacattgcacttcttaaagcattt
gaaggatataaggatgcaaaatgtaatggacgagagagagccttctgttgggaaaacttt
ttatccccagtaaccttacagatgatggaggatatgagaaaccagtttctgaatcttcta
tcagacataggctttgttgacaaatccaagggtgctagtgcctacaatcaatacagtcat
gatttggaaatggtatgtgcaattctttgtgctggtctctatccaaatgttgtacaatgc
aaacgaagagggaaacgtacagcattctacactaaagaagtgggaaaagttgaaatccat
cctgcatctgtcaatgcaggagttcatctattccctcttccgtacatggtttacagtgaa
aaggtgaaaacatccggtatttacatccgagactcaactaatatatcagattacgctttg
cttatgtttggtggcaatcttattcctagcaagactggagagggtattgagatgcttggt
ggttaccttcatttctcttcatcaaagagtgtactggaattgatccggaaattgcgaggg
gagcttgatagacttctaaataggaagatagaggaaccaagctttgacatttctgtcgag
ggaaagggtgttgtttcagctgtggttgagttgttgcatagtcagaatgtacggtactaa
DBGET
integrated database retrieval system
