Carica papaya (papaya): 110811158
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Entry
110811158 CDS
T05151
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110811158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110811158
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110811158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WDR55
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_Aladin
Beta-prop_WDR75_1st
Cytochrom_D1
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_NOL10_N
Beta-prop_VPS8
PROPPIN
Tricorn_N
Motif
Other DBs
NCBI-GeneID:
110811158
NCBI-ProteinID:
XP_021893256
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MESSSLEQILQDGKLFRHLNSLIVAHLRDNNLTQAANAVASSTMTPLNVEAPPNKLLELV
AKGLAVEKEETLRGVTSSTLLDSGILTPAAYGSIPAPRAASVDFSAALDVKGSSKSFPKH
ETWHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEISKIKQMMLPDAKDGPVRPVIRT
FYDHVQPINDLDFHPQNTILISGAKDHTVKFFDFSKATAKRGFRVIQDTHNVRSVSFHPS
GDFLLAGTDHPIPHLYDVNTFKCYLSANVPEIVGNGAINQVRYSSTGGMYVTASKDGAIR
LWDGVSAKCIRSIVGAHGTAEAISANFTKDQRFVLSCGKDSTVKLWEIGTGRLVKQYLGA
THSQLQCQAVFNDTEEFILSIDEANNEIVIWDALTAEKVAKLPSNHVGAPRWIEHSPVEA
SFISCGTDRSVRFWKEIL
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggaatccagtagcttggagcagatattgcaggatgggaaactattcaggcacctcaat
tccctcatcgttgctcaccttcgcgacaacaacctcactcaggctgcaaatgctgttgct
tcttccacgatgacaccactgaatgttgaagcccctccaaataagcttcttgagcttgtt
gccaagggtcttgcagtggagaaagaggaaacactgagaggggttacttcgtccacattg
ttagactcaggcatactgacacctgcagcatatggttctataccagctcctcgtgcagct
tctgttgatttcagtgctgctcttgatgtgaaaggctcatcaaaaagtttcccgaagcat
gagacatggcatctttcagagcacaagaatattgccagatgtgctagattcagtcctgat
ggaagatttgttgccactggaagtgctgacacatcaattaagctctttgagatttctaaa
atcaagcaaatgatgctcccagatgcaaaagatggtcctgtacgacctgtcatacggaca
ttttatgaccatgtacaaccaataaatgatttggattttcatccacaaaacacaattctg
atatctggggccaaagatcacacagtaaagttctttgatttttccaaggctactgcaaag
agaggattcagagttattcaggatactcataacgtgcgttctgtatcatttcatccctct
ggagatttccttcttgcaggaactgatcatcccattccccacttgtatgatgtgaatact
tttaaatgttatctatctgcgaatgtcccagaaattgttggtaacggagccataaatcaa
gtgaggtattcatctacaggtggcatgtatgttacagcatctaaagatggtgctattcgg
ttatgggatggtgtcagtgccaaatgcattcgctctatagttggtgcacatggaacagca
gaggctattagtgcaaattttacaaaggatcaaaggtttgttctctcatgcgggaaggat
tccaccgtgaagctctgggaaattggcactggaagattggtcaaacagtatcttggagca
acacattcacaattacagtgtcaggctgtttttaatgatactgaagaattcattctatcc
atagatgaggcaaacaatgagattgtgatctgggatgctttgacagctgaaaaggtagca
aaattgccttccaatcacgttggtgcacctcgctggattgaacattctccagtagaggct
tccttcatttcctgtgggactgacaggtctgttaggttctggaaggagattctttag
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