Carica papaya (papaya): 110811685
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Entry
110811685 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC110811685
KO
K12830
splicing factor 3B subunit 3
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110811685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110811685
03041 Spliceosome [BR:
cpap03041
]
110811685
03036 Chromosome and associated proteins [BR:
cpap03036
]
110811685
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110811685
Spliceosome [BR:
cpap03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110811685
Complex B
110811685
Complex C
U2 SnRNP specific factors
110811685
Chromosome and associated proteins [BR:
cpap03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110811685
TFTC complex
110811685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
110811685
NCBI-ProteinID:
XP_021893938
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MAVSEEECSTAKSRPSGSSSSAASHGVHYLAKCVLRGSVVLQVAYGHFRSPSFLDVVFGK
ETSIELVFIGEDGIVQSVCEQAVFGTIKDLHTVPRSNKSCGQNTQMQEKDLLVVVSDSGK
LSFLTFCNEMRRFFPMAHVQLSNPGNTRYQLGRMLSVDSSGCFVAVSAQDDRFALFSLSM
SPTSDIIDKRIYYPPDKEDAVTTRSTQRTRMSGTIWSMCFISKDPSQPNKDHNPVLAVVM
QREEFLLNELRLFEWNVRDHSICLVSQYLEAEPLAHSIVEVPHSYGFAFLFRVGDALLMD
LRDAHKPRCIYRIGLNFLPATVEEQNSSDESYRMPDIDQGLFNVAAYALLELRDYDPMCI
DGDGSNAKSDSNSYVRGSWEPKDDRNPRMIFFGHNLIVVATSNPCFXMILGFRSLSPYNY
EIYVMQHVRLQHELSCISMPEKHFGQRRSFSPINLVDNNRATTLPVGVDKGYTFVIGTHR
PSVEILSFVHDEGVKVLASGIISLTNTLGTTISGCIPQDVRLVLVDQFYVLSGLRNGMLL
RFEWPHTSSTSLSVVPCYGSAGPFSENQDMVMDASSVSSEICGVNLSEKRKEDLPVNLQL
IAMRRIGITPVFLVPFSNSLDADMIALSDRPWLLQTARHSLSYTSISFQPSSHATPICSA
ECPKGILFVSESCLHLVEMVHCKRLNVQKFHLGGTLRKVLYHSESRLLVVMRTQLPNDTC
SSDICCVDPLSGSVLSSFKLEHGETGKSMEFVRVGNEQVLIVGTGISSGRAMMPSGEAES
TKGRLIILCIEHVQNSDSGSMTLGSKAGSSSQRTSPFREIVGHAAEQLSSSSICSSPDDT
SCDGIKLEETEAWQLRLVSSTTWPGMVLAVCPYLDRYFLASAGNKFYVCGFTNDNPHQRV
KKFAGGRTRFMIVSLTVHFTRIAVGDCRDGILFYSYHEGARKLEQVFCDPSLRLVADCVL
MDVNSAAVSDRKGSIVVLSSPDHLEDDASPECNLTLSCAYYMGEVAMNLRKGSFIYKLPA
DDVLKGCYGHNANTDSSNNTIIASTLLGSIFIFIPLSREEHELLSAVQDRLVVHPLTAPI
LGNDHNEFRSRENPPGVPQILDGDMLAQFLELTSLQQDSILSLPLGSLDTVKSSSKQLSS
SPLPVNQVVQLLERVHYALN
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcagaggaagagtgttctactgcaaaatctcgaccgtcgggttcgtcttca
tcagcagcttctcacggcgttcactacctcgccaagtgcgttcttcgaggcagcgtcgtc
ctccaggtcgcctatggtcattttcgctccccttcatttctcgacgtcgtttttggcaag
gagacatcaatagaattggtattcattggtgaagatgggattgtccaatctgtatgcgag
caggctgtatttggcacaataaaggatcttcacactgttcctcgaagtaacaagtcttgt
ggacaaaatactcagatgcaggaaaaggacctcttggttgttgtttctgattcagggaaa
ctctcatttctcacattttgcaatgaaatgcgcaggtttttcccaatggcacatgttcaa
ctatccaatccagggaacacaagatatcagcttggaaggatgctatctgtagattccagt
ggttgttttgttgctgttagtgcacaagatgaccggtttgctctcttttccctttcaatg
tctcctacaagtgatataatcgataagagaatatattatcctcctgacaaagaggatgca
gttaccacaagaagcacgcagagaactagaatgtctggtacaatatggagcatgtgcttc
atttcaaaagatcctagtcaaccaaataaggatcataatcctgttctagctgttgttatg
caaagagaagaatttctcctgaatgaattacggctattcgaatggaatgttagagaccat
tctatctgtttggtttcacaatatcttgaagctgagccactcgcacatagcattgttgaa
gttcctcattcttatggatttgcctttctctttagggtcggtgatgctctcttaatggat
cttagagatgctcacaaacctcgttgtatataccgaattggcttgaactttttgcctgct
acagtggaagaacaaaattcttctgatgagtcatatagaatgcccgatattgatcaaggt
ctatttaatgttgcagcatatgctctcttagagctgagggattatgatccgatgtgtata
gatggtgatggtagcaatgcaaaatcagactctaattcatatgttcgtgggagttgggaa
ccgaaagatgacaggaatccaaggatgattttttttgggcataatttgatagtggttgct
acttctaatccatgttttntaatgattcttggttttagatctctatcgccatataattat
gaaatctacgtaatgcaacatgtaagattgcaacatgaattatcgtgcatttccatgcct
gaaaagcattttggtcaaaggagatccttttctcccatcaatttagttgataataatcga
gcaactactcttcctgttggtgtagacaaaggctatacatttgttattggcacacatagg
ccttcagtggaaatcctgtcatttgtacatgatgaaggagtaaaagttcttgcatctggg
attatttccttgacgaatactctgggaactactattagtggctgtattcctcaagatgtg
aggcttgttttagttgatcaattctatgtgctttctggattaaggaatgggatgcttctt
cgatttgaatggcctcatacctcttctacgtctttgtcagtggtgccttgttatggttcc
gctggtcctttttcggaaaaccaagacatggtaatggatgcaagttctgttagttcggaa
atttgtggtgttaacttatctgagaagagaaaggaggacctgcctgttaatcttcaatta
attgccatgcgccgtattggtattactcctgtttttttggttccctttagtaattcactt
gatgcagacatgatagctcttagtgatcggccatggttgttgcaaactgcacggcacagt
ctttcatatacttccatctcatttcaaccttcctcgcatgcaactcccatatgttctgct
gaatgccctaagggaattttatttgtttcagagagctgtctgcatttggtagagatggtg
cactgtaaaagacttaatgtgcagaagtttcaccttggaggcacactgcggaaggtcctg
tatcacagtgaaagcaggttattggttgtgatgagaactcaattgcccaatgatacatgt
tcatctgacatatgctgtgtagatccccttagtggttcagtgctgtcatcctttaaactt
gaacatggagaaactggaaagtcaatggaattcgtgagggtgggaaatgaacaagttctc
atagttgggacgggtatatcttctggtcgagctatgatgccgagtggtgaagctgaaagc
accaagggtcgtcttatcatcctctgcatcgaacatgtgcaaaattcagatagtggttca
atgacattaggctcaaaagcaggatcatcttctcaacgaacttcgccatttcgtgaaatt
gttggacatgctgcagaacagctgtcaagcagtagtatctgcagtagcccagatgacact
agctgtgatggaatcaaactagaagaaactgaagcatggcagttgcgattagtgtcctca
accacatggcctggcatggtacttgcagtctgtccatatcttgatcgctacttcttggcc
tctgctggaaacaaattttatgtatgtggttttacaaatgataacccccaccagagggtg
aaaaagtttgctggaggaaggacacgttttatgatagtgtccttgactgttcattttacc
aggatagctgttggtgattgtcgcgatggtattcttttttattcttaccatgagggtgct
agaaaactggagcaagtattctgtgatccatcactgaggctagttgctgattgcgttctt
atggatgtcaatagtgctgctgtgtcagaccgtaaagggagcattgttgtgctgtcatct
ccagatcatttagaagatgatgcaagtcccgaatgcaacttaactctaagctgtgcttat
tatatgggtgaagtagccatgaacctcaggaagggatcatttatatacaaacttccagct
gatgatgtgttgaagggttgttatggccataatgcaaatactgactcttcaaacaacacc
atcattgccagcacactgttaggaagcatatttattttcattcctttatcaagggaagaa
catgaactcctatcagctgtccaagacagacttgtggttcacccgctgactgctcctatt
ctaggaaatgatcataatgagtttcgaagtcgtgaaaacccgcctggagtaccacagata
ctagatggtgacatgctggctcagttcttggagcttacaagtttgcaacaagattcaata
ttatcattgccactgggctctttggataccgttaaatcaagctcgaaacaactttcttct
tcaccactccctgtcaatcaagtggtgcaactacttgagcgggttcattatgcgttgaac
taa
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