Carica papaya (papaya): 110811688
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Entry
110811688 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 52-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cpap
Carica papaya (papaya)
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110811688
03041 Spliceosome [BR:
cpap03041
]
110811688
03036 Chromosome and associated proteins [BR:
cpap03036
]
110811688
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110811688
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110811688
mRNA cycle factors
Common to processing body (P body) and stress granule
110811688
Spliceosome [BR:
cpap03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110811688
Chromosome and associated proteins [BR:
cpap03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110811688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110811688
NCBI-ProteinID:
XP_021893941
LinkDB
All DBs
Position
Unknown
AA seq
549 aa
AA seq
DB search
MRTSWADSATNLENAASGSSASNSLSRPQRSAYVPPHLRNRPPSSEPYAPSPANDLVASG
GPHGGSRWGAGSKPDYGRPAHGSGSMGYGSGVRSGGGWNNRSGGWDRGEREVNPFTPVQR
HAIPISLARRDLMACAQTGSGKTAAFCXPIISGIMRERYIQRPRGPRTVYPLALILSPTR
ELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV
SLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDF
LSNYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRENGVHGKQALTLVFVET
KKGADSLEHWLFVNGFPATTIHGDRTQQEREMALRSFKSGKTPILVATDVAARGLDIPHV
AHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNESNFSMAKPLTDLMQEANQEVPAW
LAQYASRASYGGGKNRRAGGRFGGRDFRREGPINRSADYYSGGNTGGGGYGVPGGYGGGY
SAGVTSAWD
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcgtgggcagattctgcaactaacttagagaatgctgcttcgggttcttct
gctagcaacagcttatctcgtcctcaacggtctgcatatgttccaccacatcttcgtaat
aggccaccatcatctgaaccctatgctccttcaccagccaatgatcttgttgcttctggt
ggtcctcatggtgggtctcgctggggtgctggttctaaacctgattatgggcgtccggca
catggctctggtagtatgggatatggttctggagttagaagtggtggtggttggaataat
agaagtggcgggtgggacaggggagagcgggaagtgaacccatttactccagttcagcgg
catgctattccaatatcacttgcacggagggacttgatggcttgtgcccagacaggatcc
gggaagacagctgccttttgcnttccaattatcagtggaattatgcgggagcgatacatc
cagcgaccacgtgggccccggactgtgtacccacttgctcttattctctctccaacgagg
gagctttcatgccaaatacatgatgaggccagaaagttttcctatcaaactggtgtcaag
gtggtggttgcttatggaggagctccaattaaccaacagctgcgagagcttgagagagga
gttgatattcttgtggcaactcctgggcgattggttgatttacttgagagggctagagtc
tccttgcagatgattagatacttggcccttgacgaggcagataggatgctagatatgggt
tttgaacctcaaattagaaagatagtggagcaaatggacatgcctccagcaggtgtgaga
cagacaatgctgtttagcgccacctttccaaaagagatacagagacttgcatctgatttc
ctttcaaattacatatttttggctgttggacgagttggttcaagtacagatttaattgtt
caaagagtagaatttgttcacgagtctgataagagaagccatcttatggaccttcttcat
gcacagagggaaaacggagttcatggcaagcaagctctgacgttagtttttgtggagacc
aagaagggagctgactcattagaacattggttatttgtcaatgggtttccagcaactact
attcatggtgatagaacacaacaggaaagagaaatggcattaagatcatttaagagtggg
aagacaccgatattggtggcaacagatgtcgcagcgcgaggccttgatatacctcacgta
gctcatgtagttaacttcgatctacccaatgacattgatgattatgttcaccggatcgga
cgaacaggtcgagcaggcaaaacagggctggcgactgccttcttcaatgaaagcaacttt
tcaatggcaaagcccctcacggacctaatgcaagaagcaaatcaggaagtacctgcttgg
ctcgctcagtatgcatcacgcgcctcatatggtggcggtaaaaatcggcgtgcgggaggg
cgttttggaggccgtgattttagaagagaaggccctattaacagaagtgcagattactac
agtggagggaacaccggcggcggcggatacggggttcccggaggttatggcgggggttac
agcgccggtgtgaccagtgcatgggattag
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