Carica papaya (papaya): 110812671
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Entry
110812671 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110812671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110812671
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
110812671
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Motif
Other DBs
NCBI-GeneID:
110812671
NCBI-ProteinID:
XP_021895181
LinkDB
All DBs
Position
Unknown
AA seq
538 aa
AA seq
DB search
MSFDLLLKPSCGGCGSTTDLYGSSCKHMTLCLTCGKTMAENRAKCYDCGVNVTRLIREYN
VRANPSSDKNFFIGRFATGLPNFSKKKSAENKWSLVKEGLQGRQLTEVLREKYKNKPWLL
EDETGQFQYHGHVEGAQSATYYLLMMQGKEFVASPAGCWYNFNKVAQYKQLTLEEAEEKM
RNRRKTADGYQRWMMKAANNGPAAFGEVEKFDDKESGAAGGRGRKKSSGDEEEGNVSEKG
EEDEEEEAARKNRLGLNKRAGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVG
NDPEEREDLAPEVPAPPEIKEDDDDENEEEEGGLSKSGKELKKLLGRANGLNDSDAEDDD
DDEDMDDDVSFSPVLAPKQKDQPKEEPADSTPPKPVPSGSSRGTPSSKSAKSKRKLDGDV
AKASNGAPPKKVKTENELKSSVKEETVPSSKSGAHAKGSSKTSSTSPMASSPTGLVTEEE
IRAVLSQKTPVTTQDLVAKFRARLKTPEDKKAFADILRRISKIQKTPGPNNYVVLRNK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgatctcctgttgaaaccgtcttgcggcgggtgtggatccaccacagatttg
tacggaagcagttgcaaacacatgaccttgtgtttgacatgcggcaaaaccatggcggag
aaccgcgcaaagtgctatgactgcggcgtcaacgttactcgcttgattagggagtataat
gttcgggcgaatccaagcagtgacaagaacttctttatcggtagatttgcaactggtttg
ccaaacttttcgaagaagaagagtgcggagaacaaatggagtctcgttaaagaaggactg
caaggacgccaactaaccgaagtcttacgggagaagtataaaaataagccttggctcttg
gaggatgaaacaggccagtttcaataccacggtcacgttgaaggtgcacagtcagcaact
tactacctgctaatgatgcaaggaaaggagtttgttgctagtcctgctggttgttggtat
aactttaacaaggttgcacaatataaacaacttacccttgaggaggcagaagagaaaatg
aggaataggaggaagactgcagatggataccagaggtggatgatgaaagctgcaaataat
ggacccgctgcatttggtgaagtagagaagtttgatgacaaggagagtggcgcagctggt
ggtaggggccgaaaaaaatcaagtggcgatgaagaagaaggcaatgtctctgagaaaggg
gaggaagatgaagaggaggaggctgcaaggaagaacaggcttggactcaacaaaagagcc
ggtgatgatgatgaagaaggtccgaggggaggtgatcacgatttggatgatgatgatatt
gagaagggtgatgattgggagcatgaagaaatttttactgatgatgatgaagctgttggt
aatgatcctgaggagcgggaagatctcgcccctgaagttcctgcacctccagagatcaag
gaggacgacgacgacgagaatgaagaggaagagggaggacttagtaaatctggaaaagag
ttgaagaagttgcttggccgagctaacggactgaatgattcagacgcagaggatgacgat
gatgatgaagacatggatgatgatgtgagcttttctcctgttctggctccgaagcagaag
gatcaacctaaagaagaaccagctgatagcactcctcctaaaccagtgccgtcaggatca
tctcgaggaactccatcttccaagtcagcaaagtcaaagagaaaattagatggtgatgtc
gctaaggcgtccaatggtgctcctccgaagaaggtgaagacagaaaatgagttaaaatct
tctgtaaaagaagaaactgtaccttcttctaaatctggtgcgcatgcgaaaggttcttcg
aaaacctcgtcaacatctccgatggcatcgtcacccactggacttgtgactgaagaagaa
atcagggctgtgctgtcacaaaagacacctgtaaccacacaggatcttgttgctaaattt
agagccagactgaaaacccctgaggacaagaaagcttttgcagatattttgaggaggatt
tctaagatacaaaagactcctggaccaaacaactatgtcgtgttgagaaacaaatga
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