KEGG   Carica papaya (papaya): 110812802
Entry
110812802         CDS       T05151                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03030  DNA replication
cpap03410  Base excision repair
cpap03420  Nucleotide excision repair
cpap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110812802
   03410 Base excision repair
    110812802
   03420 Nucleotide excision repair
    110812802
   03430 Mismatch repair
    110812802
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpap03032]
    110812802
   03036 Chromosome and associated proteins [BR:cpap03036]
    110812802
   03400 DNA repair and recombination proteins [BR:cpap03400]
    110812802
DNA replication proteins [BR:cpap03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110812802
  DNA Replication Termination Factors
   ELG1-RFC complex
    110812802
Chromosome and associated proteins [BR:cpap03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110812802
DNA repair and recombination proteins [BR:cpap03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110812802
  Check point factors
   HRAD17(Rad24)-RFC complex
    110812802
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 nSTAND_NTPase5 AAA_22 Rad17 AAA_lid_RFC1 Mg_chelatase AAA_16 Viral_helicase1 RuvB_N nSTAND3 RCF1-5-like_lid AAA_5 AAA_11 AAA_assoc_2 AAA_28 AAA_19 MeaB DNAX_ATPase_lid AAA_3 AAA_25 AAA_30 bpMoxR RNA_helicase IstB_IS21 ABC_tran AAA_18 AAA_7 KTI12 NTPase_1 AAA_24 NPHP3_N T2SSE SLFN-g3_helicase AAA_29 DO-GTPase1
Other DBs
NCBI-GeneID: 110812802
NCBI-ProteinID: XP_021895345
LinkDB
Position
Unknown
AA seq 333 aa
MASSSSSSTSIGYEMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
KTTSILALAHELLGSTYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILD
EADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGR
LMVVVGAEKVPYAPEGLEAIIFTADGDMRQALNNLQATFSGFRFVSQENVFKVCDQPHPL
HVKNMVRNVIEGKFDDACYGLKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFLKETG
FAHMRICDGVGSYLQLCGLLAKLALVRETAKAA
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggcctcgtcctcttcgtcctcaacgagtatcggctacgaaatgccatgggtggaaaag
tacaggcccagtaaagtcgctgatattgtagggaacgaagatgcagtctccaggcttcaa
gtcatcgctcgtgatggcaacatgcctaacctaatactttctggtcctccaggaacagga
aagactactagcattttagctcttgcacatgagcttctgggttcaacttatagagaggct
gtgttggaactgaatgcatccgatgacaggggaattgatgttgtaagaaacaaaattaag
atgtttgcacaaaagaaagtaacacttcctcccgggaggcataagatagtaatccttgat
gaagccgatagcatgacatctggagcacaacaagcattgaggcgcacaatggaaatatat
tcaaactctacccgttttgctttagcatgcaacacatcttctaagattattgagcccatt
cagagtagatgtgctcttgttcgattctcaagattatctgatcaagagattcttggacgt
ctcatggtggtggttggagcagaaaaggttccttatgctccagaaggtcttgaggccatt
attttcactgctgatggtgacatgaggcaagcactgaataatttgcaagcaacatttagt
ggttttcggtttgttagccaagaaaatgtcttcaaggtctgtgaccagcctcatcctctg
catgtgaaaaacatggttcgaaacgtaattgaagggaaatttgatgatgcttgttatggt
cttaagcaactctatgatatgggctactcgcccactgacatcatcacaaccctttttcgc
atcataaaaaattatgatatggcagaatacctaaaattggaatttttgaaggaaactggg
tttgcacatatgagaatttgtgatggagttggttcgtatcttcaactatgtggccttttg
gctaagcttgctctggttcgtgaaacagccaaggcagcatag

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