Carica papaya (papaya): 110812908
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Entry
110812908 CDS
T05151
Name
(RefSeq) uncharacterized protein LOC110812908
KO
K19026
spatacsin
Organism
cpap
Carica papaya (papaya)
Pathway
cpap04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
110812908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110812908
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110812908
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
110812908
NCBI-ProteinID:
XP_021895508
LinkDB
All DBs
Position
Unknown
AA seq
2515 aa
AA seq
DB search
MDGSFAGEVPAILQLCKWVPSKFQLKLSEFREAFISPTREQLLLLSYQCEALLLPLTKDD
PVDNMVPEICYVESSEHLCSSASFSQVLTTPSRSDSMDSIPCPSGSVIDFSNGFSLDSKV
SKANSYPFISDVNSLAWGVCGDTYNQHEDASFRELLFVSGNHGVTVHAFSSLDETSEKMT
TPMPEVEFRQGSWVEWGPSTSARTVEGEDYINLCPDAFGNHGKGDWGDKRLNGFSAQSRL
NSQRFNVSETQSYPIRRIFLPSDRFGGDDCICFSPFGITRLNRNCNSKDERSAQIIHLNL
PIDMSVTKNSMCDITHVQGRKEVSIGEAVGCSFQGYIYLVTKCGLSVFLPSVSVPSDFLP
LEISGHQQPSRNTGIGSQLEMSQLNQPYLCSCSPWQVEILDRVLLFEGPEKADCVCLENG
WDLKISRMRRLQMALDYLKFDEINESLDMLVNVELAEEGILRLLFSAIHLLVQKRSSDNE
VSVASRLLALATCFATKMIRKYGFVEHKREAYLLERLHGSRMLCLPSILPDKAENEIGNS
RRMHEMARFLEIIRNLQRRISAKFKKSSQGDGERALSLVDPGSLQDESHFSIAPADALSL
ETLNKQEITISASASAFNDTDKFALMPKDYVNTKASGVSDDSTDVADLEPKKVLPLENPK
EMVARWKIDKLDLKSVVKDALLSGRLPLAVLQLHLHRSREIIADEEPHDTFTEVRVIGRA
IAYDLFLKGEIGLAVTTLEKLGEDIETCLKELFFGTVRRSLRVQITEEMRRYGYLGPNDC
KILERLSLIERFYPSSVFWKTFEGRQKLKQVASTLNSIEEINLHLLGSHMFNNLIIKCGE
IDGVVLGSWTSTNENSSDPMIEEDNSQAGYWAAAAVWYGAWDQRTIDRSWKVMKRFHVNT
IHALHKLVVQHCAQYNLPNLLDLYLDHHKLVLDNDSLCSLEDSAGDCQWAKWLLLSRIKG
REYDASFSNARSIMSHSLVLGRNITLPEIDEIICTVDDIAEGGGEMGALATLMYAPAPIQ
RCISSGSINRHSSSSAQCTLENLRPTLQRFPTLWRKLLAACFGQDTTSNFLGPRVRNAFT
DHLNWRDNIFFSAVRDTSLLQMLPCWFPKAVRRLVQLYIQGPLGWQSFSGLPVGESVLHR
NIDFSINSDEHAEMNAISWEAIIQRHIEDELYDSSREETGLGLEHHLHRGRALAAFNRLL
GLRIEKLKLEDSLMHGQSNVQSDVQILLSPITQSEESLVSFVMPVAITHFEDSVFVASCA
FLLELCGLSASMLRVDIAVLRRISSFYQCTQNGDISKQVLGKGSAFHSLHHEGDIVAYLA
QALADEYVHQDTVGSFNQKGAPKIIANRRPCRALMLVLLHLEKASLPQLVGGRTCGTWLL
SGNGDGAELRNGQKAASQLWSLVTNFCQMHQLPVSTKYLALLARDNDWVGFLSEAQIGGY
PFDIVMQVASKEFSDRRLRIHILTVWETSSIKVNDIASQIAENVASAVEASNSLPADCRA
VQFRYNRQTPKRRRLMEPVDSLPPLSDSASTSRGGVFTAQSIISTEQRKTEFSEHNSVAS
DLGDGPASLSKMVAVLCEQHLFLPLLRSFEMFLPSCALLPFIRALQAFTQMRLSEASAHL
GSFSARIRDEPTHLHVHVGRESHVGTSWISSIAIKAADAMLSTCPSPYEKRCLLQLLAAT
DFGDGGSAATYYRRVYWKINLAEPLLRKDDDLHLGNETLDDDASLLTALIKSRQWEQARN
WARQLETSGSPWKSIVHHVTETQAESMVAEWKEFLWDVPEERIALWGHCQTLFIRYSFPA
LQAGLFFLKHADTGEKDLPARELHELLLLSLQWLSGMITQSNPVYPLHLLREIETRVWLL
AVESEAQLKSEGDFTSNCFSKDTGNGNSINIIDRAANIITKMDNHITTVRSKTLEKHDGR
DISQVHHRNQIFDTSSSTIAGGSTKTKRRAKGYVPPRRAVMDFMEKSIDSEDSLSSLNFK
NDLQFHDESVKLEISFSKWEEKIDPAELERAVLSLLEFGQVTAAKQLQHKLSPGPVTPEL
LLADAALKLAAMSTPSRKLLLSMLDEEFVLSLSRTDTDCVLESFATIMTEGGGRGLCKRI
IAVVKAANVLGLSFSEAFDKQPVELLQLLSLKAQESFEEACLLVQTHSMPAASIAQILAE
SFLKGLLAAHRGGYMDSQKEEGPAPLLWRFSDFLKWAELCPSESEIGHALMRLVITGQEI
PHACEVELLILSHHFYRSSACLDGVDVLVALAATRVEAYVAEGDFPCLARLITGVDNFHA
LNFILGILIENGQLDLLLRKYSAAADTNTSTAEAVRGFRMSVLTSLKHFNPNDLDAFAMV
YNHFDMKHETASLLESRAVLASQHWFRRYDRDQNEDLLDSMRYYIEAAEVHSSIDAGNKT
CRACAQASLVSLQIRMPDSRWLSLSETNARRALVEQSRFQEALIVAEAYGLNQASEWALV
LWNQMLNPELTEEFVAEFVAVLPLQPSMLIELARFYRAENSNRPFLDGIYSLLSG
NT seq
7548 nt
NT seq
+upstream
nt +downstream
nt
atggatggctcttttgctggcgaggttcctgcaatactgcaactctgcaaatgggtccca
tctaaattccagctcaaattgtcagaatttcgtgaagctttcatttctccaacaagagag
caactactattgctctcatatcaatgtgaagctttgcttcttcctctgactaaagatgac
cctgttgacaatatggttccagaaatttgttatgttgaaagttctgaacatctatgttcc
tcagcttcattttcacaagtcttgacaacacctagtaggtcagattcaatggacagtatt
ccgtgcccttctggatcagtaattgattttagtaatggtttttctcttgatagtaaagtt
tcaaaagctaatagttacccttttatttctgatgtaaactcactggcttggggtgtatgt
ggagatacctataatcagcacgaggatgcttcgtttagggaattattatttgtgtctggc
aaccatggcgtcacagtccatgccttttcttctcttgatgaaactagtgaaaaaatgacc
acacctatgccggaggttgagtttaggcaagggagttgggttgagtggggaccttctaca
tcagctcgaactgtagagggagaggattatattaatttgtgtcctgatgcctttggaaat
catgggaaaggggactggggggataagcgattgaatggtttttctgctcagtcaaggtta
aatagtcaaaggtttaatgtttctgaaacacaatcataccccatcagaagaatatttctt
ccttctgataggtttggaggagatgattgtatatgtttctcccctttcggaatcactcgg
ctaaatagaaattgtaatagcaaagatgaaagaagtgctcagatcattcacttaaatctg
cctattgatatgtcagttactaaaaattcgatgtgcgacatcactcatgtccaaggtaga
aaagaagtttctattggagaagctgtgggctgcagtttccagggttatatttatttggta
actaaatgtggtctttcagtatttctaccctctgtttcagttccatctgatttccttcct
cttgagatcagtggacaccaacagccaagcaggaatacaggcattggaagtcaattagaa
atgtcacaactgaaccagccttatttatgttcatgctcaccatggcaagttgagattttg
gatagagttcttttgtttgaaggccctgaaaaagcagactgtgtatgtttggaaaatggt
tgggacctgaaaatttctcggatgcgtcgactgcaaatggccttggattacttgaaattc
gatgagataaatgaatctttggatatgcttgttaacgtggagctcgcagaagaaggcatt
ttgaggttgctcttttctgcaatccatctgttggtgcaaaaaagaagtagtgataatgaa
gtttctgtggcatcaaggcttcttgcacttgcaacctgctttgcgaccaaaatgattcgt
aagtatggattcgttgagcacaaaagggaagcatacctattggagagactgcatgggtcc
cgaatgctttgtcttccatctattttaccggataaagcagaaaatgaaattggaaactcg
agaaggatgcatgagatggctcgctttttggagatcatacgtaacctgcaacgtcgaatt
agtgcaaaatttaagaagtcaagccagggtgatggtgaaagggcattaagtttggtggat
cctggttcattgcaggatgagtctcatttttcaattgctccagcagatgctctatcatta
gagacattgaataagcaggaaattactatctctgcatctgcatcagccttcaatgatact
gacaaatttgctttgatgcctaaggattacgtgaacaccaaagcttctggggtttcagat
gactcaactgacgtagcagatcttgagccgaagaaggttcttccattggaaaatccaaag
gagatggttgctcgttggaaaatcgacaagttggacctaaaaagtgtggtgaaagatgct
ctactgtctggccgtcttcctttagctgtccttcagctacatcttcatcgttcaagagaa
atcattgcagatgaagagcctcatgatactttcactgaagttcgtgtcattgggagagct
attgcatatgacctatttttgaagggtgaaattggattggctgtaacaacattggaaaag
cttggagaggacattgaaacgtgtctcaaggagttattttttggcacagttagaagatct
ttacgagtacaaatcacagaggagatgagaaggtatggttatttaggaccaaatgactgc
aagatattggagagactatcacttattgagaggttttatcctagcagtgttttctggaaa
acttttgaaggccgtcagaaactcaagcaagttgcatcaactttgaactctattgaagaa
ataaatttgcacctgttgggttcacatatgttcaacaatctaataatcaagtgtggggaa
attgatggagttgttttaggttcatggacgagtaccaatgaaaattcatctgatccaatg
attgaggaagacaattcccaggctggttactgggctgctgctgcagtctggtatggtgcc
tgggatcagagaactattgatcggtcttggaaagtgatgaaaaggtttcatgttaatacc
atccatgctttacataaattagttgtacagcactgtgcacagtataacttgccaaacctt
ctggatctctatcttgatcatcacaagttggtcttagataatgattcgctttgctcatta
gaggattctgcaggggattgtcaatgggcaaaatggttgctactgtctaggatcaaggga
cgagaatatgatgcctcattttctaatgcacgttcaataatgtcacatagtttagttctg
ggcagaaatatcactcttccagagattgatgaaataatctgcactgttgatgacatcgca
gaaggaggtggagaaatgggagctctagcaactcttatgtatgcccctgcaccgattcaa
agatgtataagtagtggtagtattaacaggcatagcagctcatctgcccagtgtacattg
gagaacctgagacccaccttgcaacgattccccacactttggcgcaagcttttagctgca
tgttttggtcaagatacaacttccaattttttgggacctagagtgagaaatgcttttaca
gaccacctaaattggcgtgacaacatattcttctctgctgtgcgtgacacttcacttctg
cagatgctcccgtgctggtttcctaaggctgtgcggagattagttcagctttatattcag
ggtcctcttggatggcaatccttttcaggccttcctgtaggtgaatctgtactacataga
aatattgatttctcgataaattcggatgagcatgctgagatgaatgcaatctcctgggaa
gcaataatccagaggcatattgaagatgaactatatgattcttcacgggaggaaactgga
cttggtcttgagcaccacttgcatcgtggacgtgcattggcagcttttaatcgcctactt
ggacttaggattgaaaaacttaaattggaagattctctgatgcatggccaatcaaacgtt
caatcagatgtccagatactactttcacctataacacaaagtgaagaatctcttgtttca
tttgtcatgccagttgcaattactcattttgaggattccgtgtttgtggcttcatgtgct
tttcttcttgagctttgtggcctatcggccagcatgcttcgcgtagacatagctgtcttg
aggcggatatcttccttctaccaatgtactcaaaatggtgacatttctaagcaagttttg
gggaagggttctgcatttcattcactacaccatgaaggtgatatagtagcatatctagct
caggcactggcagatgaatatgttcaccaagatactgtaggcagtttcaaccagaaaggt
gctccaaaaataattgctaatagacgaccttgtcgtgctctcatgcttgttctactgcat
ttggaaaaggctagtcttccacaactggttggtggaaggacatgcgggacttggctgtta
agtggaaatggtgatggagctgaattaagaaatggacaaaaagcagcaagccaactgtgg
agtttagttaccaatttctgtcagatgcatcaacttcctgtcagcaccaaataccttgct
ttgctggcaagagataatgactgggttggatttttatcagaagctcagattgggggatac
ccttttgacattgtcatgcaagttgcctcgaaggagtttagtgatcgtcgtctcagaatt
catatactaacagtttgggaaacttcatcgatcaaggtgaatgacatagcttctcagatc
gccgagaatgttgcatcagctgtggaagcctctaattccttgccagcagattgtagagct
gtccagttccgttacaaccggcagactccaaaacgtagacgattgatggagccagttgat
tccttgcctcccttatctgatagtgcaagtacttcccgtggcggagtatttactgcacaa
agcattatttccacagagcaaaggaaaacagaattcagtgagcataatagtgttgcaagt
gatttaggtgatgggcctgcttctctgtccaagatggttgcagtactttgtgaacaacac
ttgtttttgcctttgctaaggtcttttgaaatgttccttccttcatgtgctttattgcct
ttcatccgtgctcttcaggcatttactcaaatgcgcctatctgaagcttcagcacatctt
ggttccttctctgccaggattagagatgaaccaacacatttgcacgtacatgtaggaaga
gaaagtcatgttggaacatcatggattagttctatcgccataaaagctgctgatgctatg
ctttcaacttgtccatctccttatgaaaaacgatgtctgctacaacttcttgctgctact
gactttggtgatggaggatcggctgcaacatattatcgacgggtatattggaaaataaat
ttggcggagcctttgttgcgcaaggatgatgatctccatcttggaaatgaaactctggat
gatgatgcttcacttttgacagcattaataaagagcaggcagtgggagcaagcacgcaac
tgggctagacagttagaaactagtggttcaccttggaagtcaattgttcatcatgtcact
gaaactcaggcggaatccatggtagctgagtggaaggagttcctttgggatgtcccagaa
gagcgaattgctttatggggccactgccagacattattcattagatattccttccctgca
ttacaggctggtctgttcttccttaagcatgcagacactggtgagaaagaccttcccgca
agagagcttcatgagttattgctgctttctcttcagtggttaagcgggatgataacccag
tctaatccggtttatcccttgcatcttctaagagaaattgagactagagtgtggctcttg
gctgtagaatcagaggctcagctgaaaagtgaaggagacttcacttcaaattgtttcagc
aaggacactgggaatggaaatagcataaacattattgaccgggctgcaaatataataact
aaaatggataatcatattactacagtgaggagcaaaactttagagaaacatgatggtaga
gacattagccaggtgcatcacaggaaccaaatatttgacaccagctcttcaaccatagct
ggaggtagtacaaagacaaaacggagggcaaaaggctatgtgccaccaagaagggcggta
atggacttcatggaaaagagcattgattctgaagatagtttgagttctcttaactttaaa
aatgacttgcagttccacgatgaaagtgtaaaattagaaatatcattctcaaagtgggag
gagaaaattgatcctgcagagttggaaagggctgttctttccttactggagtttggacaa
gtaacagctgccaagcaactccaacataagctatctccaggacctgtaactcctgagctt
ttgcttgcagatgctgctttaaagctagcagcaatgtccactcctagcaggaaattacta
ttgtcgatgcttgatgaagagttcgttctgtctttaagtcgtacagatacagactgtgtc
ttggagagttttgcaactattatgactgaaggtggcggacgtggattatgtaagagaata
atagcagttgtaaaagctgcaaatgtcttgggtctttcattctctgaagcatttgataag
cagccagttgaattgctgcagctactttctctcaaagcacaagaatcgtttgaggaagca
tgtcttctcgtgcaaactcattctatgcctgctgctagcattgctcaaatacttgcagaa
tcctttttgaagggtctcttggccgcacatcgtgggggatatatggattctcagaaggag
gaaggaccagctcctctcttgtggagattttcagacttcttgaagtgggcagagctttgt
ccttctgaatctgaaattggtcatgcattgatgcgtttagtaattactggacaggaaatt
ccacatgcctgtgaggttgaacttcttatcctatcacaccacttctacagatcatctgcc
tgcctggatggagtagatgttcttgtagcccttgctgcaactagggttgaagcttatgtt
gctgagggtgattttccatgtttggctcgcctaatcacaggagttgataattttcatgct
ctaaatttcattcttggcattcttattgagaatggtcagctggatcttcttcttcggaag
tactcggctgctgcagatacaaatacaagcactgctgaggctgtcagaggtttcagaatg
tctgttcttacatcgttaaagcattttaaccccaatgaccttgatgcatttgccatggtc
tataaccactttgacatgaagcatgaaacagcatcattgttggagtcaagagcagtgctg
gcttcccagcattggtttcgccgttatgacagggatcagaatgaagatctcctggattct
atgcgatattacattgaagctgctgaggtacactcctccattgatgcgggcaataaaaca
tgcagagcgtgtgcccaggcttcccttgtttccctccaaataagaatgccggattctaga
tggctcagtctatctgaaaccaatgccaggcgagcattagttgagcaatctcgcttccag
gaggccctaatagttgcagaggcctatggtcttaaccaggcaagtgaatgggcgcttgtg
ctttggaatcagatgctcaacccagaactgacagaagagtttgtggccgaatttgtggct
gtgcttccacttcagccttccatgcttattgaactagcaagattctatagggcagaaaac
agcaatcgcccctttttagacggaatctactcgttactttctggttga
DBGET
integrated database retrieval system
