Carica papaya (papaya): 110813411
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Entry
110813411 CDS
T05151
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110813411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110813411
03012 Translation factors [BR:
cpap03012
]
110813411
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110813411
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110813411
Translation factors [BR:
cpap03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110813411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
NPHP3_N
PhoH
AAA_11
Myosin_head
Motif
Other DBs
NCBI-GeneID:
110813411
NCBI-ProteinID:
XP_021896216
LinkDB
All DBs
Position
Unknown
AA seq
1061 aa
AA seq
DB search
MLSYPLLSTSLCSSLSPSPESGSSSQSHLKATKNLFLLPFIAMKDRPPSSYGDVYIPPHH
RLRSVVTVPPRHSSSASPIDSKLGDSQTAGLKPKASNLPYLQARQQEQKQRQRQQQQYVS
AYDDGVSEDGSDREYETPCQPGTSPCANIDEWKQKLAMLLLDGGRQELVSREKKDRRDFE
QIAALASRMGLHSHAYAKVVVFSKLPLPNYRFDLDDKRPQREVNLNTYLLKRVDAYLGEY
LSQKSRTKDKCPEDSFSRSSSSGSIATDEGLFEQPEPLAATKTVMEKIFRRRSSQLLDQQ
KSWQESPEGSRMLEFRRTLPAYKEKDAILTAISQNQVVIVSGETGCGKTTQIPQFILESQ
IDMASGAACSIICTQPRRISAMSVSERVAYERGEKLGESVGYKVRLEGMRGRDTRLLFCT
TGILLRRLLVDRDLKGVTHVIVDEIHERGMNEDFLLIILKDLLPRRPELRLILMSATLDA
ELFSSYFDGAPIIRIPGFTYPVRTHFLENILERTGYRLTPYNQIDDYGQEKMWKTSKQAP
RKRKSQIASVVVDALRAADFKEYSPQTRESLSCWNPDCIGFNLIEFLLSHICENERPGAV
LVFMTGWDDISSLKEKLLAHPVLGDPAHVLLLACHGTMASSEQRLIFEEPEDGVRKIVLA
TNIAETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGE
CYHLYPRCVYGAFAEHQLPEILRTPLQSLCLQIKSLKLGSISEFLFRALQSPELLAVQNA
IEYLKIIGALDENENLTILGCYLTMLPMEPKLGKMLILGAILNCLDPVLTIVAGLSVRDP
FLTPLDKKDLAEAAKSQFSHDHSDHLALVRAYEGWKDAERDLAGYEYCWKNFLSAQSMKA
IDSLRKEFFSLLKDTGLIDGNISNCNAFAHDEHLIRAVICHGLYPGICSIVHTERSFSLK
TMEDGQVLLYSNSANARESKIPYPWLIFNEKIKVNSVFLRDSTAISDSILLLFGGFISRG
DADGHLKMLGGYLEFFLKPAVAEMYQTLRKELDELIQIKVS
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgctctcttatcctctcctgtcgacgtctctgtgttcatctctgtctccgtctccggaa
tctggttcatcttcacaatcacacctgaaagcaacaaaaaacttattcctactccctttc
atcgccatgaaggatcgccctccttcctcgtacggcgacgtttacatccctcctcaccac
cgtttacgctccgtcgtcacggtgccgcctcgtcactcttcctccgcttctccgatcgac
tccaagctcggtgacagccaaaccgccggtctaaaacctaaggccagcaacttgccttac
ttgcaagctcgtcaacaggaacaaaagcagcgacaacggcaacagcaacagtatgtttca
gcttacgatgacggtgtgtcagaggatggctctgatcgtgagtacgagacaccatgtcag
ccgggtacttccccttgtgctaatattgatgagtggaaacagaagttagccatgctttta
cttgatgggggaaggcaagagttggtctctcgggagaagaaagatagaagggattttgag
caaatagcagctttagcaagcagaatggggttgcacagccatgcatatgctaaggttgtt
gtcttcagtaagctcccactgccaaactataggtttgatttggatgacaagcgtcctcag
agagaggtcaacttaaacacctatctgcttaaaagagttgatgcctatcttggggaatat
ctttctcaaaaatcaaggactaaagataagtgccctgaagattccttttcaagatcaagc
agcagtggtagtattgctactgatgaagggcttttcgagcaaccagagccacttgcagcc
actaagactgtaatggagaaaatcttccggaggcgaagttctcaactacttgatcagcaa
aagtcttggcaggaatctccggaaggtagcagaatgctggaatttcgtagaactcttcct
gcttataaggagaaggatgcaatattgacagccatttcacagaatcaggttgttattgtc
tcaggtgaaactggctgtggcaagacaacacaaattccccaatttattttagaatctcag
attgatatggcttctggagctgcttgtagtattatatgtacacagccaaggcgaatatct
gccatgtctgtttctgaaagagttgcttatgagagaggggagaaattgggtgaatctgtg
ggatacaaagtacggctggaaggtatgagaggcagggatactcgccttctcttctgcacc
acaggcattttgttaagaagattgcttgtcgatagagatttgaaaggtgttacccatgtg
attgtggatgaaattcatgaacgtggaatgaatgaagattttctacttatcatccttaaa
gatcttcttcctcgtcgcccagagttacggctgattctgatgagtgctactttagatgct
gagcttttctcatcttattttgatggggctcctataattcgcattccgggttttacatac
ccagttcggactcattttctggagaatattttggagagaacgggctatagattgactcct
tacaatcaaattgatgattatggtcaagaaaagatgtggaagacgagcaaacaagcacca
aggaagagaaagagccaaattgcatctgttgtggtggatgcacttagagcagctgatttc
aaggaatatagcccccagactcgggagtctttgtcatgttggaatcctgattgtattggt
tttaatctcatagaatttcttctctctcatatatgtgagaatgaaagacctggtgctgtt
ctagtttttatgactggctgggatgacataagttctttaaaggagaagctcttggcacat
cctgttttgggggatccagcccatgttttgttgcttgcctgtcatggtaccatggcaagt
tcagagcagagattgatatttgaagagcctgaagatggcgtgaggaaaatagtgcttgct
actaatattgcggagacaagcatcacaattaatgatgttgtttatgttatagactgtggg
aaggcaaaagagacctcctacgatgcactcaataacactccttgtttgctgccatcatgg
atttctaaggtttctgctcaacagagaagaggtagagctggccgtgttcaacctggagaa
tgttatcatctatatcctagatgtgtatatggcgcttttgcagaacatcaattacctgaa
attttgagaacacctttgcagtctctttgtctgcaaattaaaagcctaaaacttgggagt
atttctgagttcttgtttagagcattgcaatcacccgagttattagcggtccaaaatgct
attgaatacttaaaaattattggagccttagacgagaatgaaaatctcactattttaggt
tgctatctaaccatgcttccaatggaacccaagcttgggaagatgcttatattaggagcc
attctcaattgtttggatccagtattaaccattgttgctggccttagtgttagagatcct
ttcttaacaccattggataaaaaggatctggcagaggctgcaaagtctcaattctcccat
gatcatagtgaccaccttgctcttgtccgggcctatgagggctggaaagatgcagagagg
gaccttgctggttatgaatactgctggaaaaattttctttcagcacagtcgatgaaagct
attgattctctccggaaagagttcttctctttgcttaaggatactggacttattgatggc
aacataagcaactgcaatgcatttgcccatgatgaacatctcatcagagcagttatttgc
catggcctgtatcctggaatttgttccatcgtgcacactgagagatcattctcactgaaa
actatggaggacgggcaggtgcttctgtactcgaactcagccaatgctagggagtcaaaa
attccgtatccgtggctaattttcaacgagaagataaaagtgaactctgtcttcctaagg
gattctactgctatttctgattctatccttctcctttttggtggttttatctcgagagga
gatgctgatggccacttgaaaatgttgggaggatacttggaatttttcctgaaacctgct
gtagcagagatgtaccaaaccttaaggaaagaactcgatgagctaatacagataaaagta
agttaa
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integrated database retrieval system
