KEGG   Carica papaya (papaya): 110813508
Entry
110813508         CDS       T05151                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03030  DNA replication
cpap03410  Base excision repair
cpap03420  Nucleotide excision repair
cpap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110813508
   03410 Base excision repair
    110813508
   03420 Nucleotide excision repair
    110813508
   03430 Mismatch repair
    110813508
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpap03032]
    110813508
   03036 Chromosome and associated proteins [BR:cpap03036]
    110813508
   03400 DNA repair and recombination proteins [BR:cpap03400]
    110813508
DNA replication proteins [BR:cpap03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110813508
  DNA Replication Termination Factors
   ELG1-RFC complex
    110813508
Chromosome and associated proteins [BR:cpap03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110813508
DNA repair and recombination proteins [BR:cpap03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110813508
  Check point factors
   HRAD17(Rad24)-RFC complex
    110813508
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 AAA_22 AAA_assoc_2 AAA_16 AAA_11 AAA_7 DUF815 RuvB_N AAA_5 ResIII AAA_24 DNA_pol3_delta2 RCF1-5-like_lid AAA_14 AAA_30 bpMoxR AAA_19 SLFN-g3_helicase AAA_3 nSTAND3 AAA_28 ATPase_2 TIP49 AAA_25 RNA_helicase
Other DBs
NCBI-GeneID: 110813508
NCBI-ProteinID: XP_021896370
LinkDB
Position
Unknown
AA seq 367 aa
MTEEVSLMDVDEEENNNWNQSYKPYRGKKVVVSDGKATPWVEKYRPQSLADVAAHRDIVE
TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIEIVRQ
QIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRGTNFHIHIIIFFQNKMLKLI
FFLMFFLCDRKVVFDSNKLFTSSAQKCEISLEMLSAGARLDVHESGIAALVRLSNGDMRK
ALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISHWLLNESFTESFKRISEIKTRKGL
ALVDIVREVTMFVFKIKMPSDVRIQLINDLADIEYRLSVGCNDKLQMGSLIATFTRARST
LVAAAAA
NT seq 1104 nt   +upstreamnt  +downstreamnt
atgacggaggaagtctcattgatggatgtcgacgaggaggagaataacaactggaaccag
tcttacaagccttaccgtgggaaaaaagttgtcgtttccgacggcaaggccaccccgtgg
gtcgagaagtaccgcccccagtcactcgccgatgtggctgctcatcgtgatattgtggaa
acaattgataggctgaccagtgagaacagattaccccatttgctgttgtatggtcctcct
ggcacgggcaaaacatcaaccattcttgccgtggcacgcaagctttatggagcacaatac
cacaacatgattcttgagctgaatgcatcagatgataggggaattgaaattgtgcggcaa
cagatccaagattttgctagcactcagagtttttcatttggtgcaaaatcatctgtaaag
ttagtcttactggatgaggcagatgctatgacaaaggatgctcagtttgcactgcgtaga
ggtacaaatttccatattcacattattatattttttcaaaataaaatgctgaaacttata
ttttttttaatgttttttctgtgtgatcgaaaagttgtttttgacagcaataagttattc
acatctagtgctcagaagtgtgagatctccttggaaatgttgtctgctggggctaggttg
gatgttcatgagagcggcatagcggcacttgtacggcttagcaatggtgacatgagaaag
gctttgaacatcttgcagtcaacacatatggcatctcagcatattacagaagaagctgta
tacctgtgcactggaaacccattgcccaaagacattgagcaaatatctcactggcttctg
aatgaatcatttacggagagtttcaaacgaatatctgaaatcaagacaagaaaaggattg
gctttggtggacattgtcagagaagtgactatgtttgtttttaagattaagatgccatca
gacgttcgtattcagttgattaatgatctggccgacattgaatacaggttgagcgttgga
tgcaatgataagttgcaaatgggatcgctaattgctaccttcacaagagccagatccaca
ctggttgctgctgctgctgcatag

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