Carica papaya (papaya): 110814310
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Entry
110814310 CDS
T05151
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110814310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpap03041
]
110814310
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110814310
Spliceosome [BR:
cpap03041
]
Complex C
Other components
Step II factors
110814310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
DEAD
OB_NTP_bind
IBR_1
AAA_22
AAA_19
HA2_N
RsgA_GTPase
ABC_tran
AAA_29
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
110814310
NCBI-ProteinID:
XP_021897423
LinkDB
All DBs
Position
Unknown
AA seq
1761 aa
AA seq
DB search
MRNYSFPATDREQGNAGRPPYTSFYNHNHYPGFVQRRPRYPDGQYGRQPKPNFPMNHTLD
RPPGPDPIKPNFIVELLRPTGRQCARVLKKPEIEALISQCNIAAENLAVFDSGPVAASIS
FRQWVDTLTATISLWESRLRGSHEFSVKVVSNVPVPSDTLELREKLRALFSAHVRSLLDG
EALKKWRKKVEEKSSEIAAVSAKLRRKGGVRQMMFHKLVDEKESLMAERDLVSKRVKEFE
SAIRCFLKYLEGCVAEKEDWDGGEQLVEVFKFKGDYNWEQIHHMILRECRRLEDGLPIYA
YRQDILSRILTEQTMVLIGETGSGKSTQLVQFLADSGIAADKSIICTQPRKIAAFSLAHR
AREESNGCYEKSVISYPAFSSSQQFGSGVIYMTDNCLLQHYMKDRNLSGISCIIIDEAHE
RSLNTDLLLALVKNLLNCRLDLRLVIMSATADAKQLSEYFFGCEIFHLMGRNFPVDVQYV
PRATEGTTSCGSIASYVHDVVRIAAEVHKTEEGGTVLAFLTSQMEVEWACERLEAPSAVV
LPLHGKLSFEEQFRVFQDYPGKRKVIFATNIAETSLTIPGVKYVIDSGMVKESKFEPFTG
MNVLRVCWTSQSSAKQRAGRAGRTEPGRCYRLYSECVFESMPPNQEPEIRRVHLGVAVLR
ILALGITDIKGFDFVDAPNAEAIDMATQNLVQLGAITQNKGIFELTEEGKYIVKLGIEPR
LGKLIISCFRFSLLKEGLVLAAVMANASSIFCRVGNDDDKLKADCLKVQFCHCNGDLFTL
LSVYKEWESLPESRRNKWCWENSINAKSLRRCADAVKELEGCLKNELSVIVPSYWVWNPY
KLLEHDTHLKKSILCSLSENIAMYSGYDDLGYEVALTRQHIQLHPSCSLLTFGQKPRWVV
FGEILSITNKYLVCVTAFDIESLSTLEPPPMFDNSKMETRKLQLKLITGFGSALLKRFCG
KSRSTLLSLVSRVRSACLDEKIGIEVKVDQNEIQLFASSEDMERVFFTVNDDLKREQRLL
RNECMEKCLYHGPGITPFALFGAGAVIKHLELEKRFLTVDVYNSNLDALDDKELVMFLEE
RTSGVICSTFKATSSGKESDENEKWGRVTFLTPHAAKKAAEISEVDFHGSILRLIPSRTY
LGADHKMFSFPAVKAKVYWPRRQSKGIGVVKCDVNDIHFLIDDFSNLVIGGKFVWCDRSK
KHADAVVVGGIDKQLSEAEILDVLRMATSRRILDFFLVRGDTVVNPPGGACEEAVMREIF
PFMPKRNLHNNCCRVQVFPPEPKDSFMRALVIFDGRLHLEAAKALQQLEGKVLPGCLSWQ
KIRCQQLFHSSLSCSASVYAVIKNQLDSLVARFKHLRGTECYLDRNSNGFYQVRISTNAT
KTIAELRKPLEELMVGRKVDHACLTPNVLQHLLSRDGINLKRSIQKDTGTFILLDRHCLN
VRIFGTSGNVDRAEERLVQSLLAHHESKQLEVHLRGLGLPPNLMKEIVNQFGPDLQGLKD
KVPGAELTLNVRYHIISVHGGRELKQKVEEIIYEVARMSVGSSEKHSDEVTCPICLCAVE
DGYNLEVCLHLFCRLCLVEQCESAIKNLDSFPICCTKEDCKAPFLLTDLRSLLSSEKLEE
LFRASLGSFVAASGGAYRFCPSPDCPSVYRVADSGTAGEPFVCGACHVETCTRCHLEYHS
YISCERYREFKEDPDSSLKEWCRGKENVKACPICGYTIEKVEGCNHVECKCGKHICWVCL
EFFANSNDCYDHLRSVHMSIQ
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactattcatttcctgccaccgaccgggaacaggggaatgccggcagacctcct
tatacctctttctacaatcacaatcactaccccggttttgtacaacgccgaccgcgatac
cccgatggtcaatatggacgccagccaaaaccaaatttccccatgaatcacacgttggat
cggcctcccggacccgacccgatcaaacccaatttcatcgtcgaactcctgcgcccgacc
ggtcgccagtgcgccagggtcctcaagaaacccgaaattgaagccttgatttcccaatgc
aacatcgctgcagaaaacctagccgtattcgactccggccctgttgccgcgtctatctct
ttccggcaatgggtcgacacgctcaccgcgactatttcgctctgggagtcccggcttcgc
gggagccacgaattttccgtgaaggttgtctccaacgtgccggtcccgtcagacactctg
gagctcagggagaagctccgagcccttttctctgcccacgtgaggtcactgcttgacggg
gaggccctgaagaagtggaggaagaaggttgaggagaagtcctctgagatcgctgcagtg
tcggctaagttgaggaggaaaggtggtgttcgccagatgatgttccacaagctggttgat
gagaaggaaagtttaatggcggagagggacttggtttcaaaaagggttaaggagttcgag
agtgccatacggtgctttttgaagtatcttgaaggttgtgttgcagagaaggaggattgg
gatggtggcgaacagcttgtggaggtgtttaagttcaagggggactacaattgggagcag
attcaccacatgattttgcgggagtgccggaggctggaggatggcctccctatctatgct
taccggcaggatattctctcgagaattcttactgaacagacaatggttttgattggagag
actggctccggcaagagtacgcagttggttcaattccttgctgattcaggaatagctgct
gataagtccatcatctgcactcaaccccgaaaaattgctgctttctcattggcacatagg
gccagggaagaaagcaatgggtgctatgaaaaatcagtgatatcgtatccagcattttcg
tcttctcaacagtttggttctggggtaatatatatgacggacaactgtttgctgcagcac
tacatgaaagataggaatttgtctgggatttcgtgcatcattattgatgaggctcatgaa
agaagcctgaacactgaccttcttctggcattggttaaaaatttgcttaactgtcggctt
gatttacggcttgtcataatgtctgctacagctgatgcaaaacagctttcagaatatttt
tttggctgtgaaatctttcatctgatggggaggaactttccagttgatgtccaatatgtc
cctagggccaccgagggaactaccagttgcggtagcattgcttcatatgttcacgatgtt
gtaaggatagctgcagaggttcacaaaacagaggaaggagggactgttctagcctttttg
acttctcaaatggaggtagaatgggcatgtgaaaggttggaagctccctctgcagttgtc
ttacccttacatgggaagctttcttttgaggagcaatttcgtgtttttcaagattaccct
gggaaaagaaaagtcatctttgctacaaatattgcagagacatcacttaccattcctgga
gttaagtatgttattgattctggaatggtcaaagagagtaaatttgaacctttcactggc
atgaatgtccttagagtttgctggaccagtcagagctctgctaagcaacgcgctggccgt
gctgggagaacagaacctggaagatgctatagactttactcagaatgtgtttttgagtca
atgcctcccaaccaggaacccgagattcgcagagttcatctaggggttgcagttctgagg
attcttgctttgggcatcacagatataaagggttttgattttgttgatgcacctaatgct
gaagccattgacatggccactcagaatcttgttcagttaggagctattacacagaacaaa
ggtatttttgaattgactgaagagggaaagtatatagtcaaattgggtattgaaccaagg
cttggcaagttgatcattagttgctttcgttttagcttgttgaaagagggccttgttctt
gctgctgttatggcaaatgccagcagcatattctgcagagttggtaatgacgacgataag
ctaaaagctgattgccttaaggtgcaattttgtcactgcaatggtgatctcttcacactg
ctttctgtctataaggaatgggagtctctgcctgaaagcaggagaaataaatggtgttgg
gagaacagcatcaatgccaaatccttgcgaaggtgtgcggacgcagtcaaagagttggaa
ggttgtctcaaaaatgaactttctgttatcgttcctagttactgggtctggaatccgtat
aagttactcgagcatgatactcatttgaaaaagagcatactttgctccctttcggaaaac
attgctatgtactccggatatgatgatcttggttatgaagtggctttgaccaggcagcat
attcagctacatccatcatgctctttgctgacatttggtcagaagccaagatgggttgtt
tttggtgaaatcctgtcaattactaataagtatttggtctgcgttactgcttttgacatt
gaatctttgtctactcttgaacctcctcctatgtttgacaactcaaagatggaaacaagg
aagttgcaacttaaattgattactggttttggcagcgccctactgaaaaggttttgtggg
aagtcccgcagtactctgctctctcttgtatcacgggttagaagtgcttgtctggatgag
aagattggtattgaagtgaaggttgatcagaatgaaattcaactatttgcatcctcggaa
gacatggaaagagttttcttcactgtaaatgatgatttgaagcgtgaacagagattgttg
cgtaatgaatgcatggagaaatgtttgtaccatgggcctggaatcacacctttcgcactg
tttggagctggggctgtgatcaagcatctggaacttgaaaagagatttttgactgttgat
gtttataattcaaatcttgatgcccttgatgataaggagctcgtaatgtttctggaggaa
cgtacatccggtgttatctgttctacattcaaagcaacgagcagcggaaaagagagtgac
gagaatgaaaaatggggcagggtaacatttctcactccccatgctgctaaaaaggctgct
gagattagtgaagttgattttcatggctctatacttagactaattccttcacgaacatat
cttggtgctgatcataaaatgttctcattcccggctgttaaagcaaaagtttattggcct
cgtagacagagcaagggaattggagttgtcaaatgtgatgtcaatgacatccattttctg
attgacgacttctctaaccttgtgattggaggaaagtttgtgtggtgtgatcgaagtaaa
aagcatgcagatgctgttgtggtaggtggaattgataaacagctttctgaagctgaaatt
ttggatgttttgaggatggctacaagccggagaatcttggattttttcctggtgagagga
gatactgtggtaaatccacctggtggtgcttgtgaagaagccgtaatgagagaaatattt
cccttcatgcctaaaaggaatctccacaataactgttgccgtgtccaggtcttcccacct
gaaccgaaggattcttttatgcgagcactcgtcatctttgatgggagattacatttggag
gcagcaaaagctttgcagcaattagaagggaaagtattgcctggctgtctttcgtggcaa
aaaataaggtgccagcagttgtttcacagctccttgtcttgctctgcatctgtctatgct
gtaatcaagaatcagctggattccttagttgcaaggttcaaacatttaaggggtacagaa
tgttatctagacagaaacagcaacggcttctatcaggtgagaatatctaccaacgctaca
aaaactattgcagagttgagaaaacctcttgaagaactaatggtagggaggaaagtagac
catgcctgcctcactccaaatgttttgcagcatttgctctctagagatggtatcaatcta
aagcggtcaatacagaaagatacaggaacctttatactcttggataggcattgcctaaat
gtacggatcttcggtacctcggggaatgttgacagggctgaagagagattggttcagtcc
cttctcgcacaccatgaaagcaagcaacttgaagtccatctgagaggtcttggcttgccc
ccgaacttgatgaaggaaatagtgaatcaatttgggcccgatctacaggggctcaaagat
aaggtaccgggagctgagctcactcttaatgttcgctaccatataatttctgttcatggt
ggcagagaattgaagcagaaagttgaagagatcatttatgaggtagcacggatgagtgtt
ggttcatcggagaagcacagtgatgaagtaacctgtcccatttgcttgtgtgcagttgag
gatggctacaatctggaggtctgcttacatttattttgtcggttatgcttggtagaacag
tgcgagtccgcgataaaaaacttggatagctttccaatatgctgtaccaaggaggattgc
aaggctccttttttactgacagacttgaggtctttattatcaagtgagaaattagaggag
ctctttagagcttctctggggtcatttgttgcagccagtgggggtgcctacagattttgc
ccatccccggattgtccctctgtatatcgagttgcagactctgggacagctggggagcca
tttgtctgcggagcatgtcatgtggagacatgcactagatgccatttggaatatcattca
tacatttcgtgtgagagataccgagaattcaaggaggacccagattcatcacttaaggag
tggtgcagagggaaggaaaatgtgaaggcttgcccaatctgcggatatacaattgagaag
gtggaaggttgcaatcatgtggaatgcaagtgcgggaaacacatttgctgggtctgtttg
gagttctttgctaacagtaatgactgctatgatcatctgaggtctgtacacatgagcatc
caatga
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integrated database retrieval system
