Carica papaya (papaya): 110814374
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Entry
110814374 CDS
T05151
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03015
mRNA surveillance pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110814374
09123 Folding, sorting and degradation
03018 RNA degradation
110814374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110814374
03041 Spliceosome [BR:
cpap03041
]
110814374
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110814374
mRNA cycle factors
Stress granule specific factors
110814374
Spliceosome [BR:
cpap03041
]
Complex C
Other components
Complex C specific factors
110814374
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RRM_Nup35
Nup35_RRM_2
RBD_DGKtheta
PABC_AtC3H46
HPS3_C
Motif
Other DBs
NCBI-GeneID:
110814374
NCBI-ProteinID:
XP_021897497
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MAQVQVQPQAPSVVAAANGVPTSNGMNQFMSTSLYVGDLEVNVTDSQLYDFFNQVGQVVS
VRVCRDLTTRRSLGYGYVNYSNTHDAARALDLLNFTPLHGKPIRIMYSYRDPTIRKSGAG
NIFIKNLDKAIDNKALHDTFSTFGNILSCKVATDPSGQSKGYGFVQFDNEESAKNAIDKL
NGMLLNEKQVFVGPFLRKQERESASDKVKFNNVYVKNLSESTTDEDLNKIFGEYGTITSA
VVMRDGDGKSKCFGFVNFENPEDAAQAVEALNGKKIDDKEWYVGKAQKKSERELELKGRF
EQTSKEAVEKFEGLNLYVKNLDDSITDDKLRELFTEFGTITSCKVMRDPNGVSKGSGFVA
FSTAEEASRALAEMNGRMVASKPLYVALAQRKEERRARLQAQFSQIRPSGMAPPVGPRMP
IYPPAAPGLGQQLFYGQGPPAILPPQPGFGYQQQLVPGMRPNFFVPMVQPGQQNQRTGGR
RSGAGPVQQSQQPMPLMQPQMLPRGGRVYHYPPGRNMPDGPVAGVPGGMLPIPYDMGGMP
FRDAAFSQPMTTGALATALANAPLDQQRTLLGENLYPLVDQLEHENAAKVTGMLLEMDQT
EVLHLLESPEALKAKVAEAMEVLRNVAQQQQQVNSPTDGMASLSLNDKVVS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggtacaggtacagccacaggctccttcagttgtcgctgctgcaaatggggtg
cccaccagcaatggaatgaaccagttcatgtccacttcgctgtacgttggggatcttgag
gtcaatgtgaccgattctcagctctacgatttcttcaatcaggttggacaggtcgtgtcg
gttcgggtctgccgggatttgactacccggaggtcccttggctacggttatgtcaattat
agcaatacccatgatgcggcacgggcattagatcttctaaattttacccctctacatggg
aagccaatcaggataatgtattcttatcgtgaccctactattcgtaaaagtggggccgga
aacatatttatcaagaacttggacaaagcaattgataacaaggcactacatgacacattt
tctacatttgggaatattttgtcttgcaaagtagctactgacccttcgggtcagtctaaa
ggttatggctttgtgcaatttgataatgaggagtctgctaaaaatgcaattgataagctg
aatggaatgttactgaatgagaagcaggtttttgttggaccatttcttcgtaagcaggaa
agagaatctgctagtgataaggtaaaatttaacaatgtatatgtgaagaatctgtcagaa
tcaaccactgatgaagacttgaacaaaatttttggagaatatggaactattactagtgct
gtagttatgagagatggagatgggaagtccaaatgctttgggtttgtcaactttgagaac
cccgaagatgctgctcaagctgtcgaggctctcaatgggaagaagattgatgataaagag
tggtatgttggaaaagcacagaagaaatcagaaagggagcttgaactgaaagggcggttt
gagcagacttcaaaggaggctgtggaaaaatttgaaggattgaacttatatgttaaaaac
ctagatgatagcatcactgacgataagttaagagaattgttcacggaattcggtacaatt
acttcatgcaaggttatgcgtgatcccaatggtgttagtaaaggatcagggtttgttgcc
ttctcaactgctgaagaggcatctcgggctttggcagagatgaatggtagaatggtagct
agcaaaccactttatgttgctcttgctcaaaggaaagaagaaagaagagctaggttgcag
gctcaattttcacaaattcgaccttctggaatggcacctccagtaggccctcgtatgcca
atatatccccctgctgctcctggtcttggacagcaactattctatggccaaggccctcca
gctattcttcctccacagcctggatttgggtatcagcagcaactggttcctggaatgagg
ccgaacttttttgtaccaatggtccagccaggtcagcagaaccagcggacaggaggtagg
cggtcaggtgctgggcctgtccagcaatcacagcagccaatgcctctaatgcagccacag
atgcttcctcgaggaggacgtgtctatcattatcctcctggtcgaaacatgcctgatggt
cctgttgctggtgtacctggaggcatgcttcctattccttatgatatgggtggaatgcct
ttcagagatgctgcattctcacagcctatgacaactggggctttggctacggcccttgcc
aatgcaccacttgaccaacagagaactctactgggagaaaacttatatccgcttgtggac
cagttggagcatgaaaatgctgcaaaggtgactggcatgcttctagagatggaccaaaca
gaagtactgcacctgctggaatcaccagaagccttgaaagcaaaagttgcagaagcgatg
gaggtattgagaaatgttgctcagcagcaacagcaggttaatagcccaactgatggaatg
gcctcactctcgctgaatgataaggtagtttcttga
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integrated database retrieval system
