Carica papaya (papaya): 110814522
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Entry
110814522 CDS
T05151
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110814522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110814522
03012 Translation factors [BR:
cpap03012
]
110814522
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110814522
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110814522
Translation factors [BR:
cpap03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110814522
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
AAA_16
PhoH
Myosin_head
ABC_tran
Dicer_dimer
AAA_23
Motif
Other DBs
NCBI-GeneID:
110814522
NCBI-ProteinID:
XP_021897688
LinkDB
All DBs
Position
Unknown
AA seq
926 aa
AA seq
DB search
MLDFRKSLPTSKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCSI
ICTQPRRISAMAVAERVSSERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLGD
HNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAL
TIHIPGFTHPVRAHFLEDVVEMTGYKLTSFNQIDDYGQEKMWKTQRQLAPRKRKNQITAL
VEDALSKSSFENYSSRARDSLACWMPDTIGFNLIEAVLCHICRKERPGAVLVFMTGWEDI
SCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPPNIRKIVLATNMAEASITI
NDIVFVVDCGKAKETTYDALNNTPCLLPSWVSQASARQRRGRAGRVQPGECYHLYPKCVY
AAFTEYQLPELLRTPLNSLCLQIKSLQVKSIGEFLSAALQPPEPLAVQNAVDFLKMIGAL
DEEENLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVRDPFLLPQDKKDL
AGTAKSRFCAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFS
FILREAGLVDADAGIENRLSHNQSLVRAIICSGLFPGIASVVHRETSMSFKTMDDGQVLL
YAILAKYFLVSLQSSEVVLLVQNSVNARYQTIPYPWLVFGEKVKVNTVFIRDSSGVSDSI
LILFGGALSCGLQAGHLKMLNGYIDFFMDPSLAECYLKLREELDKLLQKKLENANVDIHK
EGKYLMLAVQELVSGDQCEGRFVFGRQSKKPQDICEKDRFTKDGTNPKSLLQTLLMRAGH
SPPKYKVKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTTDNSRGDD
DDSPPDVTDNMLKLLGKRRRSKRNLG
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgctggactttcggaaatctctacctacatccaaggaaaaggaaaggctgctccaagca
attgcaaggaatcaggttatagttatatctggggagactggttgtggcaagaccactcag
cttcctcagtatatactggaatcagaaatagaatctggccgtggagcattttgcagcata
atttgcacacaacctcgaagaatatctgctatggctgttgcagaaagagtgtcttcagag
aggggagaacctcttggtgaaactgttggctataaagtgcgattagagggcatgaaaggg
aaaaatactcatcttctattttgtacaagtggcattttacttagacggctgttaggtgac
cacaatttaaatggcataacacatgtttttgtggatgaaattcatgagcgtggcatgaat
gaagatttcctattgattgtgctgaaggatctccttcctcgccgtccagatctgagattg
attttaatgagtgcaactttgaatgctgagctgttctccagttattttgggggagcactg
acaattcacattcccggctttacacatcctgtgagggcacattttttagaagatgtggtg
gagatgactgggtataagttgacttctttcaaccaaattgatgattatgggcaagagaag
atgtggaaaacacagaggcagctggcgccgcgaaaaaggaaaaaccagatcactgctctt
gttgaggatgctctcagtaaatcaagctttgagaattacagctccagggcacgtgattcc
ctagcatgttggatgcctgataccataggatttaatcttattgaagcagttctttgtcat
atatgtcgaaaggaacggccaggtgctgtgttagtgttcatgactggttgggaggatatt
agctgtttgagggatcaactcaaagctcatccccttcttggtgaccccaacagagttctg
cttctaacatgccatggttcaatggcgacatcagaacagaaactcatatttgagaggcca
cctccaaatatacgcaaaatagttctggctacaaatatggcagaggcgagcattacaatt
aacgatatagtttttgttgttgattgtggaaaagctaaagagaccacttatgatgcttta
aataatacaccttgtctgctcccttcatgggtatcacaagcatctgctcggcaaaggagg
ggcagagctggccgtgtgcagcctggtgaatgttaccatctgtatcccaaatgtgtttat
gcagctttcactgaataccaacttcctgagcttctgagaactcctttgaactctctttgc
ctgcaaattaaaagtttgcaggttaaaagcattggagaattcttgtcagcagcgctgcag
ccaccagaacccttggctgtccaaaatgctgtggattttttgaaaatgatcggggcacta
gatgaggaggaaaatctgacaaatcttgggaaattcttgtcaatgcttccagtagatccc
aagttggggaaaatgctgatcatgggtgctatcttccgctgctttgatcctatattaact
atagtgtctgggctcagtgtcagagatccttttcttttacctcaagacaaaaaggactta
gctgggacggcaaagtctaggttctgtgcaaaagactacagtgaccatatggctcttgtc
cgtgcatatgaagggtggaaagatgcagaaagagaaggatcagcatatgaatattgttgg
aggaatttcctgtctgcacagacacttcaggccatccattctcttaggaagcagtttagc
ttcattttgagagaagctggtttagtagatgcagatgcaggcattgagaacagattgagt
cacaaccaatctcttgttcgtgccatcatatgttctggcctttttcctggaatagcatct
gtagtgcacagagaaacttccatgtctttcaaaacaatggatgatggccaagtattacta
tacgcaatacttgctaaatatttcctagtatctcttcaatcatctgaggtagtgcttctg
gttcagaattctgtcaatgcgcgttatcaaactattccttatccttggctggtgtttgga
gagaaagttaaagttaacacagttttcatacgtgattctagcggtgtatctgattcaata
ctgatcctttttggcggtgctctaagctgtggcttacaggctgggcatttaaaaatgcta
aatgggtatattgatttcttcatggatccaagcttggcagagtgctatttgaagcttagg
gaagaacttgataaacttcttcagaagaagcttgaaaatgctaacgtcgacattcacaag
gaagggaagtaccttatgcttgctgttcaggagttggtatcgggtgatcaatgtgaaggg
agatttgtttttggtcgtcagagcaagaaacctcaggatatctgtgagaaggataggttt
acaaaagatggaacaaatcctaagagcttgctgcaaactctgctgatgagagcagggcac
tctcctccaaaatacaaagtgaagcaccttaagacgaatgaattcagggcactggtagaa
tttaaaggaatgcaattcgtgggaaaaccgaaaagaaacaagcagcttgcagagagggat
gctgctatagaggcactggcatggttgacgcatacaactgacaacagcagaggtgacgat
gatgattcccctcccgatgttaccgacaacatgcttaaacttcttggaaaacgtcgaaga
tccaaaagaaacttgggttaa
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