Carica papaya (papaya): 110814989
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Entry
110814989 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110814989
09123 Folding, sorting and degradation
03018 RNA degradation
110814989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110814989
03041 Spliceosome [BR:
cpap03041
]
110814989
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110814989
mRNA degradation factors
5'-3' decay
Lsm complex
110814989
Spliceosome [BR:
cpap03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110814989
Complex C
U2 snRNP components
110814989
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
Motif
Other DBs
NCBI-GeneID:
110814989
NCBI-ProteinID:
XP_021898297
LinkDB
All DBs
Position
Unknown
AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcttttcgtattttaaggatttagtgggcagagaagtgactgttgagctgaag
aatgatctggccataaggggaactctgcactctgttgatcagtatctcaatatcaagctc
gagaatacaagggttgttgatcaggacaagtatcctcacatgctttcagtgaggaactgt
ttcatcagaggatctgtggtgagatatgttcagttacctcctgatggggttgatgtggaa
ctgcttcatgatgctacgcgaagagaagctcggggtgggtga
DBGET
integrated database retrieval system
