Carica papaya (papaya): 110815038
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Entry
110815038 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110815038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110815038
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110815038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
LBR_tudor
Tudor_5
Motif
Other DBs
NCBI-GeneID:
110815038
NCBI-ProteinID:
XP_021898362
LinkDB
All DBs
Position
Unknown
AA seq
1308 aa
AA seq
DB search
MASSRRQSNGRSPLVNQQRQITAFFSKTMSPSPSPSTILSKQKSTESTDNTNPSPGPPSP
GPSPTTPSPLQSKPKKPLLVIGQSSSPHPSTPVARSCGEEVLDERIRVYWPLDKKWYEGR
VTSYDKTSRKHSVLYDDGEEEXVELGEEKIEWIQGDSEKKFKRLRRGSSMFNRVVIEDEE
MEDVQKEEDKSDGDDSSDEDWGKNMEKEVSEDAEEDDVVLEDEKDEDNEEEEAEEMQEIL
KGKSSGKIKSRKRKTSRGGKPESGKKSKSIGDVGKGNFKVSVIEPVKITESEKTFNSDNV
LTGEATDKFSCREAEKLQFLGGERRDARRRRPGEDNYDPRTLYLPPDFVKGLTGGQRQWW
EFKSKHMDKVIFFKFMGKFXEFPERDAHVGATYLELGTKKGEQPHCGFPEKNFSMNVEKL
ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVITKGTVTEGEMLSANPEASF
IMAVAESPWHSSNQASNLTFGVCVVDVAISRIILGQFRDDQECSALCCLLSELRPVEIIK
PAKMLGSETEKIMLRHTRNPLVNELIPTTEFWDAERTVQEVKTLYKRVADQSPTEYLNSA
NSPTAKSVIEEDECGCMPELLLELVRRGRDGSLALSALGGTLYYLRQAFLDETLLRFAKF
ELLPCSGFSNVVQKPYMVLDAAALENLEIFENNRNGDSSGTLYAQLNHCVTAFGKRLLKT
WLARPLYHPGSIEERQDAIAGLRGENLEYVLEFRKALSRLPDMERLLVRIFASSEANGRN
ANKVVLYEDAAKKQLQEFISALRGCELIAQECSSLSVILENVKSRQLHHLLTPGEGLPDT
QSILKQFKDAFDWAEANNSGRVIPHEGVDGEYDFACKTVEEVKSTLAKHLKEQRKLLGDT
SINYVTVGKETYLLEVPESLQGSVPRDYELRSSKKGFFRYWTPTIKKLLRELSEGESEKE
STLKSILQRLIRRFCEHHNKWRLLVSATAELDVLISLAIARDFYEGPTCRPAILGQSSSN
AVPYFSAKILGHPVLRSDSLGKGAFVPNDMTIGGSGNASFILLTGPNMGGKSTLLRQICL
AVILAQVGADVPAESLELSPVDRIFVRMGAKDHIMGGQSTFLTELSETALMLLSATRNSL
VALDELGRGTATSDGQAIAESVLEHFVNKVQCRGMFSTHYHRLAVDYEGDPKVSLCHMAC
QVGNGVGGIEEVTFLYRLTPGACPKSYGVNVARLAGLPDSVLLAAAAKSQEFEAVYGKCK
RRSHRRVVFIQKLVSAIENWKHLKPSEGLGLGSMVELQCRARILLQQS
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcacgtcgtcaaagcaatggtagatcgccgctggtgaatcagcagcgtcag
atcactgccttcttctccaaaaccatgtctccgtctccttctccttctactattctttcc
aaacagaaaagcaccgaatctacagataacactaaccctagtccgggtccacctagcccg
ggaccaagcccgacaacgccatcgccgctccaatcgaagcctaagaagcctctcctagtc
attggccaatcttcctctcctcatccttcgacgccagtcgccagatcatgtggggaagaa
gtgttagacgagaggattagggtttactggccgttggataagaaatggtacgaaggtcgc
gtgacatcgtatgacaagacatcccggaaacattcggttctgtacgacgatggcgaagag
gagnttgtggaattgggagaggagaagattgagtggattcaaggagacagtgagaagaag
ttcaagcggttgcggcgaggttcttccatgtttaatagggttgtgattgaggatgaggag
atggaagatgttcaaaaggaagaggataagagtgatggcgatgattctagcgacgaggac
tggggcaaaaatatggagaaggaggtcagtgaggatgctgaagaagatgatgttgttttg
gaggatgagaaagatgaagacaacgaggaagaagaagcagaagaaatgcaggaaatttta
aaaggaaagtccagtgggaagattaaatctaggaagaggaagacaagtagaggagggaag
cctgagtcgggaaagaagagtaagagtattggagatgtgggtaaaggaaactttaaggtt
tccgttattgagcctgtgaagattactgaaagtgagaaaacattcaatagtgataatgta
ttaacaggtgaggccacagacaaattcagctgtcgtgaagcagagaagttgcagttcctg
ggaggagagcgcagggatgcaagaaggaggcgtcctggagaggataattatgatcccagg
actctgtacctgcctcctgattttgttaagggtttaacgggtggccagaggcaatggtgg
gagtttaagtcaaagcatatggataaggttatttttttcaagttcatgggaaagttttag
gagtttcctgaaagggatgcacatgtgggggctacatacctggagctgggaaccaagaag
ggagaacagcctcactgtgggtttcctgagaaaaacttttcaatgaatgtggagaaattg
gccagaaagggttatcgagttcttgtagttgagcagacagaaacaccagagcagctggag
ctgcgacggaaggaaaaaggttctaaagataaggttgtgaagcgtgaaatatgtgcagtg
atcaccaaaggaaccgtaacagagggcgagatgctgtcagccaatcctgaggcctctttc
ataatggcagtggctgaaagtccttggcattcttcaaaccaagcatcaaatctaacattt
ggtgtgtgtgtggttgatgtggcaatcagcaggattattctaggacagttcagggacgat
caggaatgcagtgccttgtgttgcctgttatctgagttaaggccagtagaaattattaaa
cctgccaaaatgctcggttctgaaactgaaaagataatgctcagacatacaagaaaccca
ttggtcaatgagttgattccaaccactgaattctgggatgcagagagaactgttcaggaa
gtcaaaactctatataagcgagttgctgatcaatcacctactgaatatttaaacagtgca
aattcacctactgcaaaatctgtcatcgaggaagatgaatgtggctgcatgccagagctc
ttgttagagttagtgcgcagaggcagggatggcagcttagcactttctgcccttggaggc
actctttattatttaagacaggcatttctagatgaaacattgcttaggtttgcaaaattt
gagttgctcccttgctctggtttcagtaatgtagttcagaaaccctacatggtacttgat
gctgctgccctggaaaatcttgagatttttgagaacaacagaaatggagattcctcaggg
acactatatgcacaattgaatcactgtgtgacagcatttgggaagcgtttactgaagaca
tggcttgcaagacctttatatcatccaggatcaatcgaggaacgacaggatgctatagct
ggtttacggggtgagaatctggaatatgtacttgagttccgaaaagcactatccaggctt
ccagacatggaacggttgcttgtgcgtatctttgctagcagtgaagcaaatggaagaaat
gcaaataaagttgttctatatgaagatgcagccaaaaaacaacttcaagaatttatttca
gctctacggggttgtgaattgattgctcaagaatgctcctcacttagtgttattttggaa
aatgtcaaatctagacagctacatcatttgttaactcctggtgaaggtcttcctgatacc
cagtcaattcttaaacaattcaaagatgcttttgactgggcagaagccaataactctgga
cgtgtgatacctcatgaaggagttgacggggagtatgattttgcctgcaaaacagttgag
gaggtcaaatctactttagcaaaacacctcaaggagcagaggaaattacttggagataca
tcaattaattatgtcactgttgggaaagaaacatatctgctagaagtaccagaaagcctg
caaggaagcgttcctcgggattatgagttgcgttcatccaaaaaaggtttctttcggtac
tggactcctactatcaagaagttactgagagagctctcagaaggtgaatctgaaaaggag
tcaactttaaagagcattttgcagaggctaatcagacgtttctgtgagcatcataataag
tggcgactgctggtttctgcaactgcagagctggatgtattaatcagtctggcaattgca
agggatttttatgaaggaccaacatgccgcccagctatattaggccaatcatcttcaaac
gctgtgccatacttttctgctaaaattttaggacatcctgttcttaggagtgattcttta
ggcaagggtgcatttgtccccaatgatatgactattggtggttctggaaatgccagtttc
atccttctcactggtcctaatatgggtggaaagtcaactcttcttcgccaaatttgcttg
gctgtaattctagctcaggttggagcagacgttcctgctgaaagccttgaactttcacct
gtggaccgaatttttgttcgcatgggtgccaaagatcatattatgggagggcagagtaca
ttcttaaccgaactctctgaaactgctttaatgctgttgtcagcaactcgcaattcattg
gttgcactggatgagcttgggcgtgggacagcaacttcagatggacaagccattgcggaa
tcggttcttgagcattttgttaataaggtccaatgcagaggaatgttttcaactcactat
caccgattagctgtagactatgagggagatcctaaggtctccctctgtcacatggcatgc
caagttggaaatggtgttggaggtattgaagaagtcacatttctttacaggttgacacct
ggtgcatgccccaaaagttatggtgtcaatgttgctagattagctggtcttcctgattct
gtgctattggctgctgctgccaaatctcaagaatttgaggctgtatatggtaaatgtaaa
agaagatcacacaggagggtagttttcattcagaaattagtcagtgccatagaaaactgg
aaacatctcaagccttctgaaggtcttggactaggttctatggttgaacttcagtgtaga
gcaagaatacttctccagcaaagctga
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