Carica papaya (papaya): 110815126
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Entry
110815126 CDS
T05151
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110815126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110815126
03012 Translation factors [BR:
cpap03012
]
110815126
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110815126
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110815126
Translation factors [BR:
cpap03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110815126
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
Ank_2
Ank_5
Ank
Ank_3
Motif
Other DBs
NCBI-GeneID:
110815126
NCBI-ProteinID:
XP_021898472
LinkDB
All DBs
Position
Unknown
AA seq
1015 aa
AA seq
DB search
MWGKGEACKIICTQPRRISATSVSERISCERGEDIGNNIGYKIRLESKGGRHTSVVFCTN
GVLLRVLISGGTRKLMKEASKNPAKQDISDITHIIVDEIHERDRYSDFMLAIIRDMLPLY
PNLRLILMSATLDADRFSRYFGGCPVICVPGFTYPVKTFFLEDVLSILKSSENNHLDSAC
VSATNEDTDLTEEDRIALDEAIHLAWSSNEFDSLLDLVSSEGTPKIYNYQHSLNGLTPLM
VLAGKGRVLDVCMLLSFGADCHLQAKDGTTALRLAEGEGQQEAAEIIKKQMENAPPDSLE
QQMLLDKYLATINPEFVDAILIEQLLKKICIDSKVGAILVFLPGWEDINKTRERLLANPF
FRDSSKFVIISLHSMVPSVEQKKVFKSPLPGCRKIVLSTNIAESAITIDDVVYVIDSGRM
KEKSYDPYNNVSTLQSSWVSKANAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIK
RMPIEELCLQVKLLDPNCKIEEFLQKTMDPPISETIHNAIAVLQDIGALSNGEELTELGE
KLGCLPVHPLTCKMLFFAILMNCLDPALTMACASDYREPFTLPMLPNEKKRAAAAKYELA
SLYGAQSDHLAVIAAYECWQNAKRRGQEARFCSQYFVSSSTMNMLHGMRKELQSELIRHG
FIIGDVSSYSLNSRDPGILHAVLVAGLYPMVGRLCQPPKNGRRFSVETASGARVRLHSHS
INFKLSFKQTNDCPLILYDEVTRGDGGMSIRNCTVVGPLPLLLFASEIAVAPSKDSDDDD
DDDDDDGTDDDGDEDDSDEEMEVVGRSGGQEGEKFMSSPDNSVMVVVDRWLSFRSTALDV
AQIYCLRERLSASLLFKVTNPRQDLPPVLGDAIYAVACILSFDGLSGITFPPDSVESLTS
MVNATEIGKPASGRRGTAQNPNGFLKSLMDRNAFKNSSSCYDQTVAPRHVNEPGRQNATP
AVRQSQNEPGRQNATPAVRQSQKPSAHSAQSDSGKHRSFGPRVEPLKRQRRNKCR
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgtggggtaagggtgaagcatgtaaaattatttgcactcaacctcgacgtatctcagca
acatcagtttctgagagaatttcatgtgaaagaggggaagatattggaaataacattggt
tacaagattcgattggagagtaaaggtgggagacatacttcagttgtgttctgcacaaac
ggggtcctattgagggttctgatttcgggaggcactagaaagttgatgaaggaagcttct
aagaaccctgcaaagcaagatatttctgacataactcacattattgtggatgaaattcat
gaaagggatcgttactctgatttcatgttagcaattatcagggatatgcttccgttgtat
cctaatctacggctgatattaatgagtgctactcttgatgcggatcgattttcacgatat
tttggtggctgcccggtcatttgtgtccctggattcacatatcctgttaaaacatttttt
ttggaagatgtactttctatcctgaaatcttcagaaaataaccatcttgattctgcttgt
gtaagtgccacaaatgaagacactgatttgacagaggaagatagaattgctttagatgaa
gctattcatttggcttggtcaagtaatgagtttgattctctcctagatttggtatcttcc
gaaggaactccaaagatttacaattaccagcattctttgaatggattaacaccgttaatg
gtattggctggaaagggtagagtgcttgatgtctgcatgctactctcttttggggcagat
tgccatctgcaggccaaagatggcacaacagcattgagattggctgaaggagaaggtcag
caagaggctgctgaaataataaaaaaacaaatggaaaatgctcctcctgattccttggaa
caacaaatgctacttgataaatatctagcaacaatcaaccctgaatttgttgatgctatc
ctcatagagcagttattgaaaaagatttgcattgattcaaaagtgggagctatccttgtt
tttctaccggggtgggaggatataaataaaacacgagaaagattacttgctaacccattt
ttcagagatagttccaaatttgttataatatctcttcattcaatggttccatctgtggaa
cagaagaaagtcttcaaatctccacttcctggctgccgtaaaattgtactttcaactaat
attgctgaaagtgcaattaccattgatgatgttgtgtatgttatagacagtggtcggatg
aaagagaaaagctatgatccttataataatgtatcaacccttcagtcttcctgggtctca
aaagcaaatgccaagcaacgagagggtcgtgctggccgctgtcagcctggaatttgttat
catctgtattcaaaacttcgagcagcttctttgccagatttccaagttcctgaaattaag
agaatgccaattgaagaactttgtctacaggtgaagttacttgatccaaattgcaaaata
gaagagttcctacagaaaacgatggaccctccaatttctgaaaccatacataatgcaatt
gctgtccttcaagatattggggctttgtcaaatggtgaagaactgaccgaacttggggag
aagctaggttgtcttcctgttcatccattgacatgcaagatgcttttctttgccatattg
atgaactgccttgatcctgctttgacgatggcatgtgcctctgactatagggagcccttt
acacttcccatgttgccaaatgaaaagaagagagctgctgctgctaaatatgagcttgct
tcattgtacggtgctcaaagtgatcacctagcagtcatagcagcttatgagtgctggcag
aatgcgaaacgaagaggtcaagaggctcggttttgttcacaatattttgtatcatcaagc
accatgaatatgttgcatggcatgcgcaaggagctccagtcagagctgatcaggcatggg
tttattatcggtgatgtctcaagttatagtctcaattctcgtgaccctggtatactccat
gctgtccttgtggctggtttatatcctatggtgggaaggttgtgtcaacctcctaaaaat
ggcaggcggttttctgtagagactgctagtggtgctagggtgcggttgcattcccattcc
atcaattttaaactgtcctttaagcaaactaatgactgtcctttaattttgtatgatgaa
gtgacacgcggggatgggggcatgagtataaggaattgtacggttgttgggccactccca
ttattattatttgcatcagagattgctgtggctccttcaaaggacagtgatgatgatgat
gatgatgatgatgatgatgggactgatgatgatggtgatgaagatgacagtgatgaagaa
atggaggtggttggtaggtcaggcggacaagaaggggagaaattcatgtcgtcacctgat
aattctgtcatggtggtggtggatcgatggctctcatttagatcaactgctcttgatgtt
gctcaaatttactgcttgagagaacggttatctgcctctcttcttttcaaagtgacaaat
ccacgacaggatcttcctcctgttcttggggatgcgatatatgcagtagcctgcatttta
tcatttgatggcttatcggggatcacatttcccccagattctgtggaatcactaacttca
atggtgaatgcaactgagattggaaagcccgcatctggcaggagaggtacagctcagaat
ccaaatggctttcttaagtctcttatggaccgtaatgctttcaagaactcttcttcctgt
tatgatcaaactgtagcaccaagacatgtgaatgagccaggcaggcagaatgctacacca
gcagtcaggcaatctcagaatgagccaggcaggcagaatgctacaccagcagtcaggcaa
tctcagaagccttcagcacattctgcacaatctgactctgggaagcacagatcatttggt
ccaagggtagagcctttgaagcggcagcgcaggaataaatgtagatag
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