Carica papaya (papaya): 110815603
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Entry
110815603 CDS
T05151
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110815603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110815603
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110815603
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_1
ARM_TT21
TPR_12
TPR_10
TPR_19
TPR_MalT
ARM_TT21_N
HEAT_Nup120
SRP_TPR_like
ANAPC3
DUF627
Motif
Other DBs
NCBI-GeneID:
110815603
NCBI-ProteinID:
XP_021899131
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MDSRDSSSSTATNRDVSATDDDGVLSVTAALAKDAALYFQSRKFAECIEVLNQLRQKKED
DPKVLHNIAVAEYFRDGCSDPKKLLEALNSVKKRSEELVCASGEQVEAVSNLGNKVILGS
KGNNTAANSTSIVYMDEFDTSVATLNSAIVWFHLHEYSKALSVLEPLFQNIEPIDETTAL
QICLLLLDVALPCGDASKSVDVLNYLEKAFGVGFVAPSENGSAGQQQPMNLVSKSSVPNS
SLSTDASGSDLAASISASESPLSRTLSEETLEYDNVLLEIGGQNLVRSVGLSHSNDLSRA
TVDSSISTVDLKLKLQLYKVRFLLLTRNLKLAKREVKHAMNIARGRDSSVALLLKSQLEY
ARGNHRKAIKLLMASSNRAETGISSMFNNNLGCIYYRLGKYHTSSVLFSKALSNGSTLRK
EKPMKLLSFSQDKSLLVTYNCGVLYLASGKPVLAAHCFQKASLVFYKQPLLWLRLAECCL
MALQKGLLNTQASSDRSEVRVHVIGKGKWRQLVMEDRISRNGLVDPAEKDDMFLGIEGQP
KLSLSLARQCLFNAMHLLNSSDLHFPKSGLPNISSLEENGSSEAGLSKSSNHKNLHTIDP
KASSIPIGSGQVNANGDVKEQKGGTNQEIVQNSISCYRGICGRESLMIKQTLLANLAFVE
LELENPLKALSTARSLLELPDCSRIYIFLGHVYAAEALCLLHRPKEAAEHLSTYLSGGNT
VELPFQQEDCEQWQGERTVDCEELNGGPATAKGSSLEEPRDFMLMNPDEARGTLYANLAA
VYAVQGDLEKAHHFLLQAMSLVPNRPEATLTAIYVDLELGKSQEALAKLKQCSHIRFLPS
GLQLNKSS
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcgagattcatcctcatcgacggcaaccaatcgtgatgtctccgcaactgat
gacgacggggtactctccgtcactgccgcactcgctaaggacgccgctctctacttccag
tcccgcaagttcgcggagtgcatcgaggtcttgaatcagctcagacagaagaaagaagac
gatccgaaggtccttcacaatattgctgtcgcggaatactttagagatggttgttcagat
ccaaagaagttgcttgaagcacttaacagtgtgaagaagcggagtgaagagcttgtttgt
gcatctggagagcaggtggaggctgttagcaatcttggaaataaagtaattttgggatct
aaaggaaacaatactgcagcaaacagcaccagtatcgtatacatggatgaatttgatacg
tctgtggcaacacttaacagtgcaattgtttggttccatcttcatgaatattcaaaggca
ctatcggttttagagcctttgtttcaaaatattgaaccaatagatgagacaacagctctt
caaatctgtctcttgttgctggatgttgcgctaccttgtggtgatgcatccaagtctgtg
gatgtgttaaattatctggagaaagcttttggtgttggctttgtggctccaagtgaaaat
ggtagcgcaggacaacagcagcccatgaatctggtttcaaaatcttctgttccaaatagt
tcattgagcacagatgcttctggttcagatttagctgcaagtattagtgcttcagaaagt
cctctatcgagaactctatcggaggaaacacttgagtatgataatgtattgttagaaatt
gggggacaaaacttagttaggtctgtcggtctctcgcattcaaatgatctttcaagggcc
actgttgacagttctatctccactgttgatctgaagctgaagttgcagctttacaaggtc
agatttttgcttctcactagaaacctgaagctggctaagcgagaagtcaagcatgcaatg
aacattgcacgtgggcgtgactcatcggtggctctcctattgaagtcacagcttgaatat
gctcgtggaaatcaccgtaaagccatcaaattgttaatggcgtcaagtaaccgagcagaa
acaggaatttcaagcatgttcaacaacaatctgggttgcatttactatcgccttggtaaa
tatcatacatcatcagtgttattttccaaggcactaagtaatggttccactcttcggaaa
gagaagcctatgaagctattaagtttttcacaggataaatctctcctagtaacatataat
tgtggtgtgctctatctggcctctggaaaacctgtacttgctgctcattgtttccagaag
gcaagcctggttttttataaacaacctcttttgtggcttcgtcttgctgaatgctgtctg
atggctttacagaagggtcttttgaatactcaggcttcctctgatagatcagaggtcaga
gtccatgttattggcaaggggaaatggcggcagcttgtaatggaagacaggatttcaaga
aacggactcgtggatcccgctgagaaagatgacatgtttttgggtattgaagggcagccg
aagctttctttgtccctcgctcggcaatgcctatttaatgccatgcacttgcttaatagt
tctgatttgcattttcctaagtctggcctgcccaacatttcatccttggaggaaaatgga
tcgagtgaagcaggactatccaagagttctaaccacaaaaatttacacaccattgatccc
aaggcatctagtataccgattggttcaggccaggttaatgcaaatggggatgttaaagaa
cagaagggaggaacaaaccaggagattgtgcagaattctatctcttgttatagaggtata
tgtggaagggaaagtcttatgattaagcaaactcttcttgctaacctggcgtttgtagag
ttggagttagaaaaccctttgaaagctttatcaactgcgagatctctattggagcttccg
gattgttcaagaatatatatctttctaggacatgtttacgcggcggaggctctctgcttg
ctgcatcggccaaaagaggctgctgaacatttgtcaacatatttgtctggaggaaatact
gttgaactgccattccagcaagaggattgtgagcagtggcaaggcgaaagaactgtcgat
tgtgaggagttgaatgggggaccagcaactgccaagggttcttctctggaggagcctcga
gactttatgttgatgaatccggacgaggcacgtggaaccctttatgcaaaccttgctgct
gtgtacgcggtacaaggtgatctcgagaaggcccatcactttttgctgcaggccatgtcc
ctggtacccaacaggcctgaagctactctcactgcaatttatgtcgacctcgagcttggt
aaatcacaagaagctcttgccaagttaaaacaatgtagtcatatcagattccttcctagt
ggcttacaactgaataaatcttcttga
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