Carica papaya (papaya): 110815857
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Entry
110815857 CDS
T05151
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
cpap04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110815857
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110815857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpap03041
]
110815857
04121 Ubiquitin system [BR:
cpap04121
]
110815857
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110815857
Enzymes [BR:
cpap01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110815857
Spliceosome [BR:
cpap03041
]
Complex B
Other components
Prp19 complex
110815857
Complex C
Prp19-CDC5 complex
110815857
Ubiquitin system [BR:
cpap04121
]
Ubiquitin ligases (E3)
U-box type E3
110815857
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
110815857
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_DCAF12
U-box
Beta-prop_SPT8
Beta-prop_DCAF4
RMC1_N
WD40_like
zf-Nse
KNTC1_N
PAS_11
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
110815857
NCBI-ProteinID:
XP_021899515
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MNCSISGDVPEEPVVSKKSGLLYERRLIERHITDYGKCPVTGEPLTMDDIVPIKTGKIVK
PKPLHSASIPGLLGMFQNEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDESRALLAQAERQISFPVSTAVTANASSLSNGKRAAEDEELGSGGKKLRPGISANIIS
ELTDCNAALSQQRKRRQIPQTLAPVDALERYTQISSHPLHKTNKPGIISLDILYSKDIIA
TGGVDTTAVIFDRPSGQVLSTLTGHSKKVTSVKFVTQTDLILTGSADKTVRVWQGSEDGN
FDCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCLYDLSSGLCLTQVSDASENEGYTS
AAFHPDGLILGTGTSQARVKIWDVKSQANVAKFDGHAGPVTAISFSENGYFLATAAHDGV
KLWDLRKLKNFRSFEPYSDAPTNSVEFDHSGSYLAIAGSDIRVYQVASVKAEWSCIKTWP
DLSGTGKCTSIKFGPDAKYMAVGSMDRNLRIFALPGDEGGLDS
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatctccggcgatgtgccggaagagcccgtggtgtcaaagaagtcaggt
ttactctacgagagacgcttaatcgagaggcacataacggattatgggaaatgtccagtc
acaggagaaccacttactatggatgacattgttcccatcaaaacaggcaagatagtgaag
cccaaaccactgcactctgccagcatccctggtttgcttgggatgttccagaatgagtgg
gacagtttgatgctatctaattttgcattggagcagcagcttcacacagcgaggcaagag
ctaagtcatgcgctgtatcagcacgatgctgcttgccgtgtgattgcaagacttaaaaag
gaaagagatgaatcaagggcattacttgcacaggctgaaaggcagatttcttttccagta
tcaaccgcagttacagctaatgcttctagtcttagcaatgggaaaagagctgctgaggat
gaggaactcggctctggtgggaaaaaattacgtcctggaatctcagctaatattatttct
gagctaacagattgtaacgctgctctttctcagcagcgtaagaggcgacagatccctcaa
actttggctccagttgatgctttggagagatacactcagatttctagtcacccacttcac
aaaactaataaacctggcattatctctcttgacatcctttattccaaggacatcatcgcc
actggaggggttgacacaactgctgtgatctttgaccgaccatcaggacaggtcttatct
acactcactggtcattcaaagaaggtcacaagtgtaaagtttgtcactcagactgatcta
atattgactggctcagcagacaagactgtccgtgtttggcaaggatctgaagatggaaac
tttgattgtaggcacatcttgaaggatcatactgcagaggtacaagctgtaactgtgcat
gccacaaataattattttgtgacggcttctttggacaacacatggtgcttgtatgatctt
tcttccggtctttgcttgacacaggtttcggatgcttctgaaaatgagggttatacatct
gctgcatttcatcccgatggcctcattcttggaacaggcacttcacaagctcgtgttaaa
atctgggatgtaaaaagtcaggcaaatgtagctaaatttgatggacatgcaggacctgta
actgccatatctttctcagaaaatggttactttcttgcgactgcagctcatgatggtgtc
aaactgtgggatcttcgcaaactgaagaatttccggtcatttgaaccatattctgatgca
cctacaaactcagtggaattcgaccatagtggatcataccttgcaattgcaggttcagat
ataagagtttaccaggttgcaagcgtcaaagcagaatggagctgtatcaaaacttggcct
gatttgtcggggacaggtaaatgtacttctatcaaatttggcccagatgcaaaatatatg
gcagtgggatcaatggatcgcaatcttcgcatatttgccttgcctggagacgagggtgga
ttagattcatga
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integrated database retrieval system
