KEGG T05151: 110816624

Carica papaya (papaya): 110816624

Entry

110816624         CDS       T05151

Name

(RefSeq) RNA polymerase II transcription factor B subunit 4

K03143

transcription initiation factor TFIIH subunit 3

Organism

cpap Carica papaya (papaya)

Pathway

cpap03022

Basal transcription factors

cpap03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:cpap00001]
09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110816624
  09124 Replication and repair
   03420 Nucleotide excision repair
    110816624
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpap03021]
    110816624
   03400 DNA repair and recombination proteins [BR:cpap03400]
    110816624
Transcription machinery [BR:cpap03021]
Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     110816624
DNA repair and recombination proteins [BR:cpap03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     110816624

SSDB

Motif

Pfam:

Tfb4

Other DBs

NCBI-GeneID:

110816624

NCBI-ProteinID:

XP_021900576

LinkDB

Position

Unknown

AA seq 296 aa
MASMSCKLYSDDVSLLVVLLDTNPFFWSSSSLSFHQFLSHVLAFLNSVLCLNQLNQVVVI
ATGYNSCDYIYDSSLASNRTYESGGMPAIFAGLLQKLEEFVMKDETLSKEEPEGRIASSL
LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVSVMNSIFSAQHSMVPIDSC
YIGPQNSAFLQQASYITGGVHHKPQQLDGLFQYLTTIFATDLHSRSFIQLPKPVGVDFRA
SCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQSQVEATNTSNLKRKTPES

NT seq 891 nt +upstreamnt +downstreamnt
atggcttcaatgtcttgtaagctctattcagatgatgttagtctgctggtcgtgctgctt
gacacaaatccctttttctggagttcttcttcgctctctttccatcaatttctctctcac
gtacttgcttttttgaactcagttttgtgcttaaatcaattgaaccaagtcgttgttatt
gctactggatataattcctgtgattatatttatgattcgtctttggcttcgaaccggacc
tatgagagtgggggaatgcctgctatctttgccggcttgttgcaaaaattggaagaattt
gtgatgaaggacgagacattgagcaaggaagagccagaggggaggatagcgtcgtcccta
ttgtcagggtcattatcaatggctctttgttatatacagagagtttttcgttctggacca
ctccatcctcaacccagaattttatgcttgcagggatctccagatggacctgaacagtat
gtttcagtcatgaattctatattctctgcccagcactccatggttcctatagattcttgt
tatataggtcctcagaattctgctttcttgcagcaggcttcctatataactggtggtgta
catcacaaacctcaacaattggatggcttgtttcaatatctcacgacaatttttgcaact
gatttgcattctcgcagtttcatacaacttccgaagcctgttggtgttgatttccgtgcc
tcgtgtttttgccacaagaatacaattgacatgggctacatctgttctgtatgtttgtcc
atattctgtaagcatcaaaaaaaatgttcaacctgtgggtcagtatttggtcaatcccaa
gtagaagctaccaacacgtcaaatctaaagagaaagactccagaatcataa

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