Carica papaya (papaya): 110816627
Help
Entry
110816627 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110816627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpap03041
]
110816627
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110816627
Spliceosome [BR:
cpap03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110816627
Complex C
U5 SnRNP specific factors
110816627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
Motif
Other DBs
NCBI-GeneID:
110816627
NCBI-ProteinID:
XP_021900582
LinkDB
All DBs
Position
Unknown
AA seq
2178 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAY
RGRPPELDEKLKKSKKKKDRDPQAEPVLTRQSKRRRLREESVLTASDEGVYQPKTKETRA
AYEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNESVKNPDKKKEIEKLLNPIPNQIFDQ
LVSVGKLITDYQDGGDASGTSTANGDDALDDDVGVAVEFEENEDEEEESDLDMVQEDEEE
DEDVVEPNGSGAMQMGGGLDDDDTRDANEGMSLNVQDIDAYWLQRKISQAYEQQIDPQQC
QKLAEEVLKILAEGDDREVETKLLVHLQFEKFSLIKFLLRNRLKIVWCTRLARAEDQEER
KKIEEEMMGLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESSGDGDRDRRG
LVDRDAESGWLKGQLQLLDLDSLAFEQGGLLMANKKCDLPLGSFRHQRKGYEEVHVPALK
PKPLDANERLVKISDMPEWARPAFSGMQQLNRVQSKVYNTALYTADNILLCAPTGAGKTN
VAVLTILQQLAFNRNPDGTFNHGNYKIVYVAPMKALVAEVVGNLSNRLKDYQVNVKELSG
DQSLSRQEIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDVKKGLFYFDNSYRPVPLSQQYIG
ITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDTLSRF
LREDSASREILQSHTDMVKSNDLKDLLAYGFAIHHAGLTRGDRQLVEDLFRMGHVQVLVS
TATLAWGVNLPAHSVIIKGTQVYSPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIIT
GHGELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLYVRMLR
NPTLYGLAPDVLTKDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKES
LEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWAQLAEKA
LNLCKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDLAWDRFYDLSSQEIGELIRYPKMG
RTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDCQWDDKVHRYVEPFWVLVEDNDGE
YILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAPT
GSGKTICAEFAILRNHQKGPECTMRIVYIAPLEAIAKERYRDWEKKFGKGLGMRVVELTG
ETSMDMKLLERSQIIIGTPEKWDALSRRWKQRKYVQQVSLFIIDELHLLGGQGGPVLEVI
VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV
DISNFEARMQAMTKPTYTAIVQHAKNEKPAIVFVPTRKHVRLTAVDLMTYSSVDSQENPA
FLLRSPEELEPFVSRINEEMLRATLRQGVGYLHEGLSSLDQEVVSQLFEAGWIQVCVMSS
SLCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA
PRKEYYKKFLYEAFPVESHFHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLAQNP
NYYNLQGVSHRHLSDHLSELVENTLSDLEASKCVAIEEDMELSPLNLGMIASYYYISYTT
IERFSSLLTSKTKMKGLLEILTSASEYAQLPIRPGEEDVVRRLINHQRFSFENPKCTDPH
VKANALLQAHFSRQAVGGNLALDQREVLIYASRLLQAMVDVISSNGWLSLALLAMEVSQM
VTQGMWERDSMLLQLPHFTKELAKKCQENPGKNIETVFDLVEMEDDERRELLQMSDNQLL
DIARFCNRFPNIDLSYEVLESENVGTGEDVTLQVTLERDLEGRTEVGPVDAPRYPKAKEE
GWWLVVGDPKSNQLLAIKRVSLQRRARVKLEFATPAEAGKKTYTLYFMCDSFMGCDQEYT
FSVDVKEAMALDDDSGRE
NT seq
6537 nt
NT seq
+upstream
nt +downstream
nt
atggctcacctgggtggtggtgcggaggcacacgcccgattcaagcagtacgagtatagg
gccaactctagcctggttctcactaccgattctcgccctcgtgacacccatgagcccacc
ggggagcccgagtcgctctggggcaagattgatcctaaatcttttggtgaccgggcttac
agaggcaggccccccgaattagacgagaagctcaagaaatcaaaaaagaagaaggaccgt
gatccccaggcagaacctgttcttactcgacaaagcaagaggcgccgcctccgtgaagag
agtgttcttacagccagtgatgaaggcgtttaccagcccaagacaaaggaaaccagggct
gcctatgaggccatgcttagtcttattcaacagcagttgggcgggcagcctctcaatatt
gttagtggtgctgctgatgagattttggctgtccttaagaacgagtctgttaagaacccg
gacaagaagaaggagattgagaagttgttgaacccaattcctaatcaaatatttgatcag
cttgtttctgttggaaagcttatcaccgattaccaagatggaggtgatgcttctggcact
tctacagctaatggtgacgacgcactggatgacgatgtgggagtagctgttgagtttgag
gagaatgaggatgaggaagaggaaagtgatcttgatatggtccaagaggatgaggaagag
gatgaagatgttgtcgagcctaatggttctggggcaatgcaaatgggtggtgggctcgat
gatgacgacacacgtgatgccaatgagggcatgagccttaatgttcaggacattgatgct
tattggcttcagagaaagatttctcaagcttatgaacaacaaattgacccacagcagtgc
cagaagcttgcagaagaggtgcttaaaatactagccgagggggatgacagagaggttgaa
actaaacttttggtgcatctccagtttgaaaagttcagcctcattaagttcttgttgcga
aaccggcttaagattgtttggtgtacccgtttggctagggcagaagaccaggaggaaagg
aagaagattgaagaggaaatgatgggtttgggcccagacttggcagcaattttggagcaa
ttgcatgcaacaagagcaactgcaaaggagaggcaaaagaatttggagaagagtattaga
gaagaggctcgtcggctgaaagatgagagcagtggcgatggggatagagatagaaggggt
cttgttgacagagatgcagaaagtggttggttgaaaggccaacttcagttgctggatctg
gacagcctggcttttgaacagggcggccttctgatggcaaataaaaaatgtgatcttccc
ttgggttcttttaggcatcagcgaaagggttatgaagaggttcatgttccggccttaaag
ccaaagccattagacgccaatgagcggcttgtgaagatatctgacatgcctgagtgggca
cgaccagcattcagtgggatgcaacagctgaacagggttcagagcaaagtctacaacact
gctctttacacggctgataacattctcctctgtgctcctactggcgcagggaaaactaat
gttgctgtactaaccattcttcagcaacttgcatttaataggaatccagatggtacgttt
aatcacgggaattataagattgtatatgttgcccctatgaaagcccttgttgccgaagtt
gttggtaatctttctaaccgtttgaaagattaccaagtgaatgtgaaggagctaagtgga
gatcagtcactgagtcggcaagaaattgaagagacccaaataattgtgactactcctgag
aagtgggatatcattaccagaaagtctggagatcgcacatatacccagcttgtgaagctt
cttatcattgatgagattcatcttcttcatgataatcgagggccagtcctcgaaagtatt
gttgctagaactgttaggcagattgaaactacaaaagagcatattcggttagtgggttta
tcagctactctgcctaactatgaagatgtggccttgtttttacgggtcgatgtcaagaaa
gggctgttttattttgacaatagttacagacctgttcctttgtctcaacagtatattggg
attacagtaaagaaaccactccagaggttccagttgatgaatgatgtgtgttatgagaag
gtcatggcagttgcagggaagcatcaagtcttgatttttgtccactcaagaaaggaaaca
gccaagacagcacgtgcaattcgagatactgcacttgctaatgatactcttagtaggttc
ttgagggaagacagtgctagccgtgagattcttcaaagtcatacagatatggtcaagagt
aatgatctcaaagatcttctggcttatggttttgcaattcatcatgccggtttgacgagg
ggtgatcgccagcttgttgaggatctttttcgtatgggacatgtgcaagtgttggtatcc
actgccactcttgcttggggtgtaaatttgcctgctcactctgttattatcaaggggacc
caggtatacagtccagaaaaaggggcgtggactgagctaagtcctcttgatgttatgcag
atgctgggtcgtgcagggaggcctcagtatgattcttatggtgaaggaataataatcact
ggccacggtgaactgcagtactatctttctttgatgaaccagcagcttccaattgaaagt
cagtttgtctccaaacttgctgatcagcttaatgcagaaattgtccttggaacagttcaa
aatgctagggaagcctgcaactggattggctacacttacttgtatgttcgtatgctacga
aatcctacactctatggcttagcaccagatgttctcacaaaggatattacgttggaggag
aggagggctgatttgattcactcagctgcaacaatcttggacaagaataatttggtaaag
tatgatagaaaaagtggatatttccaggtgacagatttgggtcgtattgctagttactat
tacataactcatgggacgatatccacgtataatgaacatttgaagccaacaatgggtgac
atagagctttgtcgattgttctctctgagtgaggagtttaaatatgtgacagtcagacaa
gatgagaagatggagctggcaaaacttttggaccgtgttcccattccaatcaaggaaagc
ctagaggagcctagtgcaaaaatcaacgttttgctgcaagcatatatttcacagctgaag
ctcgaaggactttctctgacatctgacatggtgtacataactcagagtgcggggcgtctt
ctacgagcactttttgaaattgtcttgaaacgaggatgggcacaattggcagagaaagct
ttgaacttgtgtaaaatggttacaaagaggatgtggagtgtccaaacacctcttcgccag
ttcaatggaatcccaaatgaaattctgatgaaattggagaagaaagatttggcctgggat
aggttttatgatctatcatctcaggagataggggagcttattcgttacccaaagatgggc
agaacacttcacaagttcattcatcaattcccaaaactaaaccttgcggcgcatgttcag
ccaataactcgtactgttttgagggttgaactgacaataacaccagattgtcaatgggat
gacaaggttcatagatatgtggagcccttttgggtactagttgaggataatgatggtgaa
tatattcttcatcatgagtattttatgctgaaaaaacaatatattgatgaagaccacact
ttgaattttacagtgccaatttacgaacctttgccaccccaatatttcatccgggtggtg
tcagataagtggcttggctcacaaactgttctacctgtctcatttaggcatctgattctt
ccggagaagtatcctccaccaacagagttgttggacttgcaaccccttcctgtgactgct
ttaagaaatccgtcatatgaggctctctatcaagactttaagcattttaatcctgtccag
actcaggtcttcactgttctatacaatacagatgacaatgtcctagttgctgcaccaaca
ggcagtgggaagaccatatgtgcggagtttgctatactgaggaatcatcaaaaaggacct
gaatgtactatgcgcattgtgtatattgcacctcttgaagccattgccaaggaaaggtat
cgtgattgggagaagaagtttggcaagggtcttggcatgcgagtggtggaattgactggg
gaaacgtcaatggatatgaagctgctcgagagaagtcagataatcatcggcactcctgag
aaatgggatgctttgtcccgcaggtggaaacagcgcaagtatgtgcagcaggttagtctt
ttcattattgatgaacttcatttgcttggaggtcaaggtgggcctgtgttggaggtgatt
gtctctaggatgagatatattgcaagtcaggttgagaacaagatccgtattgttgctttg
tctacttcacttgcaaatgccaaggatctaggtgaatggataggggctacctctcatggt
cttttcaacttccctcctggtgttcgtcctgtgccacttgagatacacattcagggagtg
gatatatctaattttgaagcaaggatgcaagcaatgacaaaaccaacatacacagcaatt
gttcagcatgccaagaatgagaagcctgctattgttttcgtccctacgcgaaaacatgtc
cgactcactgcagttgatctaatgacatactcaagtgttgacagccaggaaaatccagca
tttctgctgcgatctcccgaggaacttgagcctttcgtcagcagaatcaatgaggaaatg
ttgagagctactttacgccagggagtggggtacttacatgagggtttaagcagtttggat
caagaggtggtctcgcaactgtttgaagctggatggattcaggtttgtgtcatgagcagt
tcgttgtgttggggagtgccattgtcagcacatttggtggttgtgatgggaacacaatat
tatgatgggcgggaaaatgctcacactgattaccctgttacggatttattgcagatgatg
ggacatgctagccgacctctgcttgataactctgggaaatgtgtcatcctttgccatgca
cctcgaaaagaatattacaagaagttcttgtacgaagcattccctgtggaaagtcatttt
caccatttcttacatgataattttaatgcagaagtggttgcaggagttattgagaacaag
caagatgctgtggattatcttacttggactttcatgtacaggaggctcgcgcagaacccc
aactattacaatctccaaggagtaagtcacaggcatctctcagatcacctttcagagctt
gttgagaacacattgagtgatttggaagcaagtaaatgtgtagctatagaagaggacatg
gaactatctcctctgaatcttggcatgatagcgtcatactactatatcagttataccact
attgaacgcttcagttctttgttgacttctaaaacaaaaatgaagggccttctggagatt
ctgacatcagcttccgagtatgcacaacttcctattcgacctggagaggaggatgtggtt
cggaggttaatcaatcaccagaggttttcctttgaaaatcctaaatgtacagaccctcat
gtaaaggcaaatgcgctgctgcaagctcacttctcaaggcaagctgtgggtggtaatcta
gcattggatcagagagaggttctcatttatgctagtagactgcttcaagcaatggttgat
gttatttcaagtaatggttggctgagccttgctctcctggcaatggaggtgagccaaatg
gtgacacaaggcatgtgggagcgagattccatgctactgcagcttcctcacttcacaaag
gagttggccaagaagtgccaagagaatccgggtaagaatatagagacagtgtttgatctg
gtggagatggaagatgatgagcgccgcgaactcctgcagatgtcagataatcagttgctg
gatattgctaggttttgcaatcgttttcccaatattgatttgtcatatgaggtgttggaa
agtgagaatgtggggactggggaagatgtcacattgcaggtcactcttgaacgagatcta
gaagggaggacagaggtggggcctgttgatgcacccaggtatccaaaagccaaagaagaa
ggatggtggcttgttgttggagaccccaagagtaaccagcttcttgccatcaagagggtt
tcccttcagaggagggcaagagtcaagcttgagtttgctactcctgcagaagctggaaag
aagacatacacgctgtatttcatgtgcgattcatttatgggttgtgaccaggaatatacc
ttctctgtggatgtcaaggaagcaatggcccttgatgacgatagtggaagagagtaa
DBGET
integrated database retrieval system
