Carica papaya (papaya): 110817085
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Entry
110817085 CDS
T05151
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03030
DNA replication
cpap03410
Base excision repair
cpap03420
Nucleotide excision repair
cpap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110817085
03410 Base excision repair
110817085
03420 Nucleotide excision repair
110817085
03430 Mismatch repair
110817085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpap03032
]
110817085
03036 Chromosome and associated proteins [BR:
cpap03036
]
110817085
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110817085
DNA replication proteins [BR:
cpap03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110817085
DNA Replication Termination Factors
ELG1-RFC complex
110817085
Chromosome and associated proteins [BR:
cpap03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
110817085
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110817085
Check point factors
HRAD17(Rad24)-RFC complex
110817085
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
RuvB_N
DNA_pol3_delta2
Rad17
AAA_5
AAA_lid_RFC1
nSTAND3
RsgA_GTPase
AAA_16
Septin
MMR_HSR1
AAA_11
AAA
COMPASS-Shg1
TsaE
Motif
Other DBs
NCBI-GeneID:
110817085
NCBI-ProteinID:
XP_021901173
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MPAQSTIPVRSASCSDPGLTTKMAALKNRVTTRSETNSSKSNLSYWLRWTNTNILRCRRG
GDSELTQESLEAHNRKHSYVPYVLGDLLDDAGANHRYRKYAGSPGRDSHATTFASNSTSS
SSFSIFILKMQELGSSCFTFKTRTTTAAVMESTRSKNSPVTRHPHKNRVTAGDGSKSGNV
DRSEASVGNVGKPLRERVRATSDGNDEDDGNKKDSRTVEKGNERFVWANKYRPKALENFI
CNRDKATQLQTLMSEGGCDHVIFQGPPGVGKRTMIRALLRAAFGAENVQTKTKPKTFDLK
GEIRGKIEVNVKESSQHVEINVSDLKGYEKHVIVELIKKTHSRIIPSKPSLNSSPDSTCQ
AIILREADKLSTDALLYIRWLLERYRGSNKFFFCCSDISKLQPIKSLCTVVQLFPPSKQE
IIEVLEFIANQEGIDLPYQLAEKIAENSKNNLRQAIRSFEACFYSCYPFKEDQEILTGWE
EDIANIAKNIIEEQSPKELYVIRGKLKNLIEHDVSPEYIFKTLVEELKKHLDEAMQLQVQ
SLYEDYNRNSGNMFESEKSTSFGRRSNPMRKNLEHFLRIEEFTAKFMSCYSHQSRKSNTC
NLRPTINGDCEGEEGKTMSC
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgccggctcaatcaacaatcccagtcagatcagcttcttgctctgatccggggttgacg
acgaagatggctgctctcaaaaatcgagttaccactcgctctgaaaccaactcctccaag
tccaatctctcctactggctgcgctggaccaacaccaacatcctccgctgccggagaggc
ggcgactctgaattaacacaggaatctcttgaagcccataaccgaaaacactcttatgtc
ccttatgttctcggcgatttactggacgacgccggcgcaaatcaccggtacagaaagtac
gccggtagccccggacgagacagccatgccaccacttttgctagcaattcaacttcgtct
agctccttctccattttcatcctcaagatgcaggagttgggttcttcttgcttcaccttc
aaaaccagaactacgactgctgctgtcatggagtcaacgagatcaaaaaattcaccggtt
actcgtcatcctcataagaacagggttacagctggtgatgggtcgaagtcgggtaatgtt
gataggagtgaagcttcagtgggtaatgttgggaagccattgagggagagagtacgagct
acgtcagatgggaatgatgaggatgatggtaataaaaaggactcgaggactgttgagaag
ggtaatgaaagatttgtatgggcaaataagtataggccgaaagctttagaaaatttcatt
tgtaatcgagataaggctacccagttgcagactctgatgagcgagggagggtgtgatcat
gttatcttccaaggacctcctggtgtggggaagcgaaccatgatccgagctctacttcga
gcagcttttggagctgagaatgtccagacaaagacgaagccgaagacttttgatttgaag
ggagaaatcagaggtaagattgaggtaaatgtgaaggaatcttcccaacatgtcgagatc
aacgtatctgatctaaagggctatgaaaagcatgttatcgtcgagcttatcaaaaagaca
catagcaggatcatcccttccaagccttccttaaattccagtcctgactctacttgccaa
gcaattatcctgcgagaggcagataagctatcaacagatgcactactgtatataaggtgg
ttgttagagaggtacaggggaagtaacaagttcttcttctgctgctctgatatttcgaag
cttcagcccattaaatcactctgtacagtcgttcagcttttcccaccttccaaacaagag
atcattgaagtattggagttcatagccaatcaagaaggcatagatttgccttaccaacta
gcagagaagatagccgaaaactccaagaacaatctccgccaagctatccgttcattcgag
gcttgcttttactcatgttatccgttcaaggaagatcaagaaattttgactgggtgggaa
gaagatattgcaaatattgccaagaacatcattgaagagcaaagccctaaagagttgtat
gtaatccgtggtaagcttaagaatcttatagagcatgatgtctcccctgaatatatcttc
aagactctggtagaagaactaaagaaacatcttgatgaggcgatgcagctccaagttcaa
agtctatatgaggattacaacaggaatagcggaaatatgtttgagagcgaaaaaagtaca
agctttggacgtcgtagcaatcccatgagaaagaaccttgaacatttcttaaggattgaa
gagtttacggcaaaattcatgagctgctacagccatcagtcacgaaaatcaaatacctgc
aacctcaggcccactatcaatggcgattgtgaaggtgaagaagggaaaacgatgtcctgc
tga
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