Carica papaya (papaya): 110817789
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Entry
110817789 CDS
T05151
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110817789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110817789
03041 Spliceosome [BR:
cpap03041
]
110817789
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110817789
Spliceosome [BR:
cpap03041
]
Complex B
Other components
Prp19-related factors
110817789
Complex C
110817789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
110817789
NCBI-ProteinID:
XP_021902166
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MSIPQEFYPSQDDLLYEEEILRNPFSLKLWWRYLIAKADEPFKKRFVIYERALKALPGSY
KIWYAYLRERLDIVRNLPVTHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTEQKLITR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHVEDFIVFL
VKSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLMTRHANEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLFEKTRDIFEEGMTTVITVRDFSVIFDAYSQFEESMV
AHKMENMDSSDEEEDENEENGVEEDEDVRLDVNLSVEKLEKKMLRGFWLHDDKDIDLRLA
RLENLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQVLTYTEAVRTIDPMKAVG
KPHTLWVAFAKMYESHRNIDNARVIFDKAVQVNYKTVDHLASVWCEWAEMELRYKNFKEA
LELMRRATAEPSVEVKRRVAADGHEPVQMKLHKSLRLWSFYVDLEESLGTLESTRAVYER
ILDLRIATPQIIINYAFLLEENKYFEDAFSVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KTKLDRTRELFEQAVEAVWILFFFKFLVWLSELINFAPADAVKPLYLQYAKLEEDFGLAK
RAMKIYEQATKAVPNDEKLEMYEIYIARAAEIFGVPRTRDIYERAIESGLPHKDVKTMCL
KYAELEKSLGEIDRARGIYLYASQYADPRSDPDFWNKWHEFEVQHGNEDTFRDMLRVKRS
VSASYSQTHFILPEYLMQKDQRMNIDDAKEKLKLAGVPEDEMAALEKQLVPSSNNNATAK
DGTRKVGFVSAGVESETDGGVNATANHEEIELPEESDSEEDDKVEIAEKDVPAAVYGGLA
RKREDEEDAAGATKGLGALERIKRLKRGA
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataccgcaagagttttatccttctcaagatgatcttttatacgaagaggaaatc
ttgcgcaatccctttagtctcaaactttggtggaggtacctgattgcgaaagctgatgaa
cctttcaagaagcgtttcgttatctacgagcgagctctgaaagccctgcccggaagttac
aagatttggtatgcctatttacgggagcgccttgacattgtccgaaacctcccagtcact
cactcccaatatgaaacacttaataacacattcgaaagagctcttgttactatgcataag
atgccacggatatggataatgtacctacaaaccctaacagagcagaagttgatcacaagg
actcgaaggacatttgatcgggcactttgtgcactacctgtaacgcagcatgatcggatt
tgggagccttatttggtgtttgttagccaaaagggtataccgattgagacttcccttagg
gtttatcgcaggtatttaaagtatgatcctactcatgttgaggattttattgttttcttg
gtgaagtcaagcctctggcaagaggctgctgagagattggcttcagtattgaatgatgat
cagttttattcaattaaggggaagaccaagcatagattgtggttggagttgtgtgatttg
atgacacggcatgcgaatgaggtttcggggcttaatgtggatgcaatcatcaggggaggg
attaggaagtttactgatgaagtgggaagactgtggacttctcttgcggattattatatt
aggcggaagctatttgagaaaaccagagatatttttgaagagggtatgacaacagtgatt
actgtaagggattttagtgtgatttttgatgcatattcacagtttgaagaaagtatggtt
gctcataagatggaaaatatggattccagtgatgaagaagaagatgaaaatgaagagaat
ggtgttgaggaagatgaagatgttcgtctagatgtaaatttgtcagtggagaagcttgag
aaaaagatgcttcgtggattttggttacatgatgataaggatatagacttgaggctggcc
cgattggagaatcttatgaacagaaggccagaactagcaaatagtgtgcttttacgacag
aatcctcataatgtagaacagtggcatcgtagagtcaagatatttgagggtaatccgaca
aagcaggtcttaacctacactgaggcagtaaggacaattgacccaatgaaagcggttggc
aaacctcatacgttgtgggttgcctttgccaagatgtatgagagccacagaaatatagat
aatgccagggttatttttgataaggcagtccaagtaaattacaaaaccgtggatcattta
gcaagtgtttggtgtgagtgggcagaaatggagttgaggtacaagaatttcaaagaagca
ctggagctgatgaggcgtgctacagctgagccatcagttgaagtcaaaagaagagtggct
gctgatggacatgaacctgtccagatgaagctacataagtccttgcgactttggtcattc
tatgtggatctggaggaaagcttgggtactttggagtccactagggcagtatatgagcgg
atattggatttaagaatagccacaccccaaatcattataaattatgcatttctgctggag
gaaaataagtactttgaagatgcatttagtgtatatgaaagaggtgtcaagatatttaag
tatcctcatgtgaaagacatttgggtgacatatctctcaaagtttgtgaagagatatggg
aagacaaaactggaccggacaagggagttatttgagcaggctgttgaagcagtatggatc
ttatttttctttaagtttttggtttggttatcagaattaataaatttcgcccctgctgat
gccgtgaaacccttatatctgcaatatgctaaactggaagaggattttggtttggcgaag
cgagccatgaagatctatgaacaagcaaccaaggcagttccaaatgatgagaagcttgag
atgtatgaaatttatattgctcgtgcagcagaaatattcggtgtcccaagaacaagagat
atctatgagcgagcaatagagtctggactgccgcacaaggatgtgaagactatgtgtctg
aaatatgcagagttggagaaaagtttaggagagattgatcgcgctcgtggaatataccta
tatgcatcacaatatgcggatccacgatctgatcctgatttctggaataagtggcatgaa
tttgaggtgcaacatggaaatgaagatacctttagagacatgctgcgtgttaaaagaagt
gtttctgcaagctatagtcagacgcactttattctaccagagtatttgatgcagaaggat
cagagaatgaacatagatgacgccaaagagaaactgaaattggctggtgttcctgaagac
gaaatggctgctctggagaagcagttagttccttcatccaataataatgctactgctaaa
gatggcaccagaaaggtgggttttgtaagtgctggagttgaatcagagactgatggagga
gtaaatgccaccgcaaatcacgaagaaattgagttgcccgaagaaagtgattcagaagag
gatgataaagtcgaaattgcagagaaagatgttcctgctgcggtttatggaggtcttgcc
cggaagagagaagatgaagaagatgcagctggagctaccaagggtcttggagccctagag
agaattaaaaggctgaaacgaggggcttga
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