Carica papaya (papaya): 110818072
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Entry
110818072 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110818072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpap03041
]
110818072
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110818072
Spliceosome [BR:
cpap03041
]
Complex C
Other components
Step II factors
110818072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
DUF5110
nSTAND3
Sigma54_activ_2
AAA_16
ABC_tran
AAA_30
Flavi_DEAD
TsaE
PhoH
nSTAND_NTPase5
T2SSE
Motif
Other DBs
NCBI-GeneID:
110818072
NCBI-ProteinID:
XP_021902522
LinkDB
All DBs
Position
Unknown
AA seq
955 aa
AA seq
DB search
HERQRESRTRDRRRGRDRGRERERDGDSSYRNRDRHRDRYDRLDRHRDRNYDGDYDRRRD
KDRDRHRHRRDGHEENGDRRESDKDEDRGSNRRHISNEPELYKVYKGRVSRVMDTGCFVQ
LNDLRGKEGLVHVSQIATRRISNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQETGKD
LLPLKRSSDDDAFRTNPSGSKEGPVATTGLSGISIMEENNTVPSRRPLKRMSSPERWEAK
QLIASGVLRVDEYPMYEDDGDGLLYQEEGAEEELEIELNEDEPAFLHGQTRYSVDMSPVK
IFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQ
ELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVL
VVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY
AIRFEDCTGPDTVIKYMTDGMLLREILIDESLSQYSVIMLDEAHERTIHTDVLFGLLKHL
VKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITV
LQIHLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRI
FEPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASA
KQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGHITLNMKAMGINDLLSFD
FMDPPAPQALISAMEQLYSLGALDEEGLLTKLGXKMAEFPLEPPLYKLDVVSAGKNFTKI
RKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMR
EVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
catgagcggcaaagagagagcaggacgagagataggcgtagaggtagagacagaggcagg
gaaagagaaagagacggagacagcagttataggaatagggacagacatagagatagatat
gatagattagatcggcacagagaccggaactatgacggggattatgataggagaagggat
aaggacagggataggcataggcatagaagagatggacatgaggagaatggagatagaagg
gagtctgacaaagatgaggatcgagggagcaataggcggcacatatcaaatgaacccgaa
ctatacaaagtgtacaaagggagggtgtcaagagtgatggacacaggctgcttcgtgcaa
ttgaacgatttgagagggaaggagggtctggtgcatgtctcgcagattgctactaggagg
attagtaatgctaaagatgttgtgaagcgggatcaggaggtctatgtgaaggtgatttct
gtttcgggtcagaaattgagtctttctatgagggacgttgatcaggagactggcaaggat
ttacttcctctgaagaggagctcagatgatgatgcctttaggactaatccttcagggtcc
aaggaggggccagtggctacaactgggctttcagggatttcgattatggaggaaaacaat
actgttccatcacgcaggccattgaagagaatgagttcgcccgagagatgggaggcgaag
cagttgattgcctctggtgtcttgagggtggatgagtatccaatgtatgaggatgatgga
gatggattgctctatcaagaagagggtgctgaggaggagcttgagattgagttgaatgaa
gatgagcctgcatttttgcacgggcaaaccagatattctgttgatatgtcaccagtgaag
atattcaaaaatcctgaaggttcgttgagtcgtgcagctgcacttcaatctgcactcata
aaggagaggagggaagtgcgagaacagcagcagagaaccatgctcgattcaattccaaaa
gatcttaatcgaccatgggaggacccaatgccagaaactggtgagaggcatcttgcacag
gagcttagaggtgttggcttgtcagcttatgatatgcccgaatggaagaaagatgcattt
ggaaaagctctaacttttgggcagagatcaaagctctccatccaggagcagaggcagagc
ttgcctatttacaaattaaaaaaggagttgatacaggccgtgcatgataaccaagtcctg
gttgtcattggtgagacaggctccggaaagactacacaggtgacacagtaccttgcagaa
gcaggctacaccacaagaggtaagattggttgtactcagccacgtagggtagcagcaatg
tctgttgctaagagagttgcagaggagttcggttgtcgcttgggggaagaagttgggtat
gcaattcggtttgaagattgcactggaccagatactgtgatcaagtacatgactgatggt
atgcttcttagggagattcttattgatgagagcctctctcagtactctgttatcatgctt
gatgaagctcatgagagaacaattcacactgatgtcctttttggattgcttaaacatctt
gtaaaaaggagacctgaccttcgattgattgtcacctcagctacattagatgctgagaag
ttctcagggtactttttcaattgtaatattttcacaatccccggaagaacttttcctgtt
gagatactttataccaagcagccagaaagtgactacttagatgctgctctgattactgtc
ctacagattcacttgacagagcctgaaggtgatgtcctcctcttcttgactggtcaggaa
gagattgattttgcatgccagtctctttatgagaggatgaaaggactgggtaaaaacgtt
cctgagcttattattttgccagtatatagtgctcttcctagtgaaatgcaatctaggatt
tttgaacctgcccctccaggaaagaggaaagtggttgtggcaacaaatattgctgaagca
tctttgacaattgatgggatatactacgtcgttgatcctggttttgcaaagcaaaatgtt
tataacccaaagcaagggctagaatcattggtgataactcccatttcacaagcatcagcc
aagcaacgggctgggcgtgctggccgcacagggcctgggaaatgttaccgtctatatact
gagagtgcataccgcaatgagatgtccccaacaacaattccagaaatccaaaggatcaat
cttggacatattactctcaacatgaaggccatgggtataaatgatctcttgtcttttgat
tttatggatccgcctgcccctcaagccctgatttctgccatggaacagttatacagtctt
ggagctctggatgaggagggcctcttgactaaattgggtnagaaaatggcagaatttcct
ctggagccaccactgtataaattggatgttgtgagtgcaggaaagaatttcaccaagatt
aggaaggcaatcacagcaggattcttttttcatgctgctagaaaggaccctcaagaaggc
tataggacgctagttgagaaccagccagtgtacattcaccccagcagtgcacttttccag
agacaaccggactgggtcatttaccatgagctggtaatgaccaccaaagagtacatgcga
gaggtaacagttattgatcctaagtggcttgtggaattggctccaagattcttcaaagta
gcagatcctaccaaaatgagtaagcgcaagcgtcaagaacgtattgagccactctatgat
agataccatgaacctaattcttggcgtttgagcaaacgacgtgcatga
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integrated database retrieval system
