KEGG   Carica papaya (papaya): 110818346
Entry
110818346         CDS       T05151                                 
Name
(RefSeq) LOW QUALITY PROTEIN: MMS19 nucleotide excision repair protein homolog
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
cpap  Carica papaya (papaya)
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cpap03036]
    110818346
   03400 DNA repair and recombination proteins [BR:cpap03400]
    110818346
Chromosome and associated proteins [BR:cpap03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    110818346
DNA repair and recombination proteins [BR:cpap03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     110818346
SSDB
Motif
Pfam: MMS19_N MMS19_C
Other DBs
NCBI-GeneID: 110818346
NCBI-ProteinID: XP_021902878
LinkDB
Position
Unknown
AA seq 1130 aa
MAETIQLTQHIEAFIDASRSTTQQAASLDAIASLVRKDVLTLETLVTEMEMYLTTTDNVI
RARGILLLGELLRHLVSKPLDSATMHSLIGFFTERLADWRALRGALVGCLALMRRKNDAG
MITITDAKEVAKSYLQNLQVQSLGQHDRKLCFELLECLLECYPDAIAALGDDLIYGICEA
IDGEKDPQCLVLTFHIVELLAKLFSDPCGLLAGFAGDIFDILSCYFPIHFTHPKGQEVDV
TRNDLSRALMQAFSSTPIFEPFVIPLLLEKLSSSLPVAKVDSLKYLSDCTLKYGAERVAK
HHVAIWSLIKDTICTFHTSVLSFAPESLNGVEFQENEIVTESLRLLHALVMQNPSFVSLI
IADEDINTIFSSITSYQSYGEIPLQNKQKLHTVARILSVSIKASIASCNLVYQSSFTRLM
DILGLSVRSSSDDCLPNYNCTISRRLNHGALCLCIELLAASRDLILGSEELVSKSVYGDE
IWCSLLKSFSALLIEAFTFSIMVTNEDGDDGDKYLGVKGLQILGTFPGGCLLISNIMFER
ILMVLLSVVTENYNDELGWKLALKGLVNIGSSIRRSHESEKAQSYMSIVVEKVISLSSLT
DDVPFPLKLEAVSDIGTSGVDYMLKIVKGLGEVLCAKISEVYVCIKISSLLGSFLMDNII
DSDDIFVQFAANIWNQVESCMDPKIQIHEEEVLDEAMMVMKLVVAACSVDSQNIIIQKAY
AVLSSSTFDLKKSTTNMPICLDGPKINNMSSRDDWILSLFAAVVMAVSPQAHIPNVKSML
HMFLILLLKGHIPAAQALGSMLNKMILHTNTGDISSDCSLEEAVNIIFNTTLWIFHDNSS
PSTSRGTDANEMDLTTLCYSFIKDRCLPVHVIIGLAWIGKGLLMRGHEKIKDMTMIFLEC
LLSGGEKSALLPSSEQDVCYSVMKTAADAFQIFMCDSEICLNQKFHAVIRPLYKQRFFST
MLPIMKSLVVKANSSLSRPMLYRAFAHIVTDTPLVVILNNARGLIQMMLDSLSNLSNDIL
HKDVLYSLLLILSAILTDKMGQEAATENAHIIINCLVALISYPHMMLVRETAIQCXVAMS
GLPYTRIFPVRIQVIQGVVKALDDPKRIVRQEAVRCRQAWASTASRSLHS
NT seq 3393 nt   +upstreamnt  +downstreamnt
atggcggaaacgatacagctgactcagcacatagaagcattcattgacgcttctcgatcg
acaactcaacaggctgcaagtttagatgcaattgcttctcttgtgagaaaagacgtacta
acattagaaacactggttacagagatggaaatgtacttaactactacagataacgttatt
cgtgcaagaggtatccttcttcttggggaactgcttagacatctggtatcaaagccactg
gacagtgctactatgcatagcctgattggattcttcacagaaagactggcagattggaga
gctttacgtggggcccttgttggttgtttagcattgatgaggcgtaaaaatgatgctggt
atgatcaccatcactgatgcaaaagaagttgcaaagtcttatttacagaacctgcaagtg
cagtctctaggacagcatgaccggaagctttgcttcgaacttctggagtgccttttggaa
tgctatcctgatgctattgctgcactgggtgatgatcttatttatggaatctgtgaagcc
attgatggagaaaaggatcctcagtgcttagtgttgacgtttcacattgtcgagcttctg
gcaaaattgttctctgatccgtgtggtctgcttgctggttttgccggtgacatttttgac
attttgagttgttactttcctatccattttacacatccaaaaggtcaggaggtagatgtg
acaaggaatgatctttcaagggctctaatgcaagcgttttcatccacacctatttttgag
ccatttgtcattcctttgcttcttgaaaagctttcttcttctctgccagtagcaaaggtt
gactcgttgaaatatctcagtgattgcactttgaagtatggagcagagagggtggctaaa
catcatgtagctatttggtctttgataaaagatacaatatgtacttttcacacatctgtt
ttgtcctttgctccagaatcacttaatggtgtggagtttcaggagaatgaaattgtaaca
gaatctctacgtcttctacatgcacttgttatgcaaaatccttcattcgtaagtttaatt
attgctgatgaagatataaacacaatcttcagtagcatcactagttatcaaagttatgga
gaaattcccctgcaaaataaacagaagctacatactgttgctcgaattctttctgtgtct
atcaaggcttcaattgcctcctgcaatctggtttatcagagctctttcacccgcttaatg
gacattctgggactttcagtgagaagttcttctgatgactgcttacccaattacaattgc
acgatctccagaagacttaatcatggagctctatgtctttgtattgaacttcttgcggca
tccagagacttaattctgggatctgaagaacttgtgtcaaaatctgtttatggagatgag
atatggtgctccttattaaaaagcttttcggctttgttaattgaagccttcaccttttct
atcatggttactaatgaagatggtgatgatggagataaatatcttggagtaaaaggtttg
cagattctgggtaccttccctggtggctgtttactaatatcaaatatcatgtttgagaga
atcttaatggtgcttctctcggttgtcactgagaattataacgatgagttgggctggaaa
ctggcattaaagggacttgtcaacattggctcatctatcaggagaagtcacgagtctgaa
aaggcacagagctatatgagtattgttgttgaaaaagtcatttcattgtcttctctcact
gatgatgtcccatttcctctcaaactggaggcagtttctgacattggaactagtggagtg
gattacatgctgaaaattgttaagggactgggagaagttctctgtgccaaaatttctgaa
gtttatgtatgtatcaaaataagttctctacttggttctttcctgatggataacatcatt
gactctgatgacatcttcgtgcaatttgctgctaatatctggaaccaagttgaaagttgc
atggatcctaagattcaaatccatgaagaagaagttcttgatgaggcaatgatggtcatg
aagcttgttgttgccgcttgttcagtggacagccagaacataataatccagaaagcttat
gccgtactttcatcaagcacatttgatttaaagaaatcaacaaccaatatgccaatttgc
ctggatggtccaaagattaataatatgtccagtagagatgactggatcctttcattattt
gcagctgtagtaatggcagttagtcctcaagcacatattccgaatgtgaaatcaatgttg
catatgtttctgatactccttctcaagggccatattccagcagctcaggcattgggttct
atgcttaataaaatgattttacataccaacactggagacatttcaagtgattgttccttg
gaagaagctgtgaatataattttcaacacaactttgtggattttccatgataacagctct
ccaagcacatccaggggaactgatgcaaatgagatggatttaaccacattatgctacagt
tttataaaggatagatgccttccagtccatgttattattggactggcatggattggaaaa
ggtttgcttatgcgaggccatgaaaaaattaaagacatgactatgatctttttggagtgt
ttactgtcaggtggtgaaaagagtgccctacttccaagttctgagcaagatgtgtgctat
tctgtgatgaaaactgcagcagatgcgtttcaaatttttatgtgtgattccgaaatttgt
ttgaatcaaaagttccatgcggtgatacggccactgtacaagcagcgctttttctcaact
atgttgcccataatgaagtccttagttgttaaggcgaactcatcactctctagacctatg
ctatatcgggcatttgcacatattgtgacggacactccattggttgtcatcttgaacaat
gccagagggctaattcaaatgatgctagatagcttgtccaatttaagcaatgatattctg
cataaagatgttttgtatagtctactgctgatcctatctgcaatattgaccgacaaaatg
ggacaagaagcggctacagagaatgcacatatcatcattaattgcctcgttgccctgatt
tcttacccgcatatgatgcttgttcgagagacggcaattcaatgtnctgttgctatgtct
gggttgccgtatacaagaattttccccgtgagaattcaggtaatacaaggtgtagtaaag
gcacttgatgacccaaaaagaattgttcgtcaagaagctgtcagatgccggcaagcatgg
gcatcaactgcatcaagaagtcttcattcgtga

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