Carica papaya (papaya): 110818706
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Entry
110818706 CDS
T05151
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03015
mRNA surveillance pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110818706
09123 Folding, sorting and degradation
03018 RNA degradation
110818706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110818706
03041 Spliceosome [BR:
cpap03041
]
110818706
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110818706
mRNA cycle factors
Stress granule specific factors
110818706
Spliceosome [BR:
cpap03041
]
Complex C
Other components
Complex C specific factors
110818706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RRM_Nup35
SET_assoc
RRM_RdRP1_2
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
110818706
NCBI-ProteinID:
XP_021903356
LinkDB
All DBs
Position
Unknown
AA seq
647 aa
AA seq
DB search
MAQIQVQHQAPVSGPNGGVAANTGANQFTTSLYVGDLDWNVTDTQLFDLFGQIAPVVSVR
VCRDLTTRRSLGYGYVNYSNPQDAARALQVLNFTPLHSKPIRIMYSHRDPSLRRSGTGNI
FIKNLDKAIDHKALHDTFSSFGNILSCKIATDSSGQSKGYGFVQFDNEESAQTAIDKLNG
MLINDKQVYVGRFLHKHERGSALNKTKFNNVYVKNLSESTTDEDLTKIFCEYGVITSAVV
MRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKSEREQELKVRYEQ
SMREAVDKYQGVNLYLKNLDDSIGDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS
TAEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPMAMPPSVAPRMPMY
PPGHPGLGQQFLYGQAPPAIIPPQAGFGYQQQLVAGMRPGGAPMPNFYVPMVQQGQQGQR
PGGRRGASPVQQAQQPVPLMQQQMVPRGRMYRYPPGRNMPEVPMAGVAGGMLSVPYDGGM
PMRDVGMGQPIPISALASALANATSEQQRTMLGESLYPLVEQLEHDAAAKVTGMLLEMDQ
PEVLHLLEAPDALKAKVAEAMEVLRSVASQQQANSSSDQLASLSLND
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaagtgcagcatcaggcaccggtatcggggccgaacggtggtgtggct
gcaaacactggagcgaaccagttcacaacctcgctttatgtcggggatttggactggaat
gtgaccgatacacagctcttcgatttattcggccaaattgccccggtcgtatctgttagg
gtctgcagggacttgaccacccggcgatctcttggctatggttatgtcaactacagcaac
ccacaagatgctgcaagggcattgcaggtcctgaattttaccccattacacagcaagcct
atcaggatcatgtattctcatagggatcctagtcttcggaggagtgggactggaaacata
tttataaagaatctggacaaagcaattgaccacaaagcattacatgatacattttcttcg
tttggcaacattctttcatgcaagatagctactgattcatccggccagtccaaaggctat
ggttttgttcaatttgacaatgaagaatcggctcaaactgctatagataagttgaatggc
atgttaattaatgataaacaggtatatgttggacgctttcttcataagcatgaaagaggg
agtgctctgaataaaacaaaattcaataatgtctatgtgaaaaatctttctgagtcaaca
acggatgaggatttgaccaaaattttttgtgaatatggagtaattactagtgcagtagtg
atgagggatggagatgggaagtcaaaatgttttggatttgtaaactttgaaaatgctgat
gatgctgccgaggctgttgaagcacttaacggaaagaaatttgatgagaaggaatggtat
gttggaaaagcccagaagaagtctgaaagagaacaagaactgaaagtccgatatgagcaa
agtatgagggaagctgtagacaaataccaaggggtgaatttataccttaagaacttggac
gatagtattggtgatgaaaaactgaaggagttgttttcagagtttggtacaattacctca
tgcaaggtcatgcgcgatcctagtggaatcagcaagggttctgggtttgtggcattctcg
actgccgaagaagcatcccgagctcttgctgaaatgaatggtaaaatgattgttagcaaa
ccactttatgttgcacttgcacagcggaaagaagagaggagagcaaggctacaggctcaa
ttttcacagatgaggcctatggctatgcccccttctgttgctcctcgtatgccaatgtat
cctcctggtcatccaggtcttggtcaacaattcttatatgggcaagcacctcctgctata
attcctccacaagctgggtttggttatcagcagcaacttgttgctggaatgaggccaggt
ggggctcctatgcctaatttctatgttccaatggtccagcaaggtcagcaaggtcagcga
ccaggtggacggcgtggagctagtcctgtgcagcaggcccagcagcctgtcccgctgatg
caacagcagatggttcctaggggacgaatgtatcgttacccacctggtaggaacatgcca
gaagttccgatggcaggtgttgctggaggcatgctttccgtcccttatgatggtggcatg
ccaatgagagatgttgggatgggacaaccaatacccatatctgctttggcttcggcactt
gcaaatgcaacatctgaacagcaaaggactatgcttggagaaagcctgtaccctttagtg
gagcagctggagcatgatgctgcagcgaaggtcacaggcatgcttctagaaatggaccag
cctgaagtcctgcatcttcttgaagcacctgatgcactgaaggccaaggttgcagaagcc
atggaggtgctgcggagtgttgcttcacagcagcaagccaatagctcatcagatcaacta
gcttctctgtcgctgaatgattaa
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integrated database retrieval system
