Carica papaya (papaya): 110819424
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Entry
110819424 CDS
T05151
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110819424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpap03041
]
110819424
03009 Ribosome biogenesis [BR:
cpap03009
]
110819424
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110819424
Spliceosome [BR:
cpap03041
]
Complex A
U2 snRNP components
U2 related factors
110819424
Complex B
110819424
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110819424
Ribosome biogenesis [BR:
cpap03009
]
Eukaryotic type
90S particles
Helicases
110819424
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
T2SSE
SRP54
AAA_30
Flavi_DEAD
AAA_7
TsaE
FtsK_SpoIIIE
NACHT
Motif
Other DBs
NCBI-GeneID:
110819424
NCBI-ProteinID:
XP_021904293
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVTGKVTKLNGGAAMNSNSVGGNLSSLVNRWNGRPYSQRYYE
ILEKRKTLPVWQQKEEFFQVLKASQTIILVGETGSGKTTQIPQFVLEAVDIETPDKRRKW
MVGCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSCARTVLKYLTDGMLLREAM
TDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNG
APLLKVPGRLHPVEIFYTSEPERDYLESAIRTVVQIHMCEPPGDILVFLTGEEEIEDACR
KITKEIGNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEDSPPGRKIVVSTNIAET
SLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRTGRAGRTQPGKCFRLYT
ERSFHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL
GALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREA
QKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDSSWCYENFINHRTMKAADNVRQQLVR
IMARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNC
LDHKPEWVIYNEYVLTSRNFIRTVTDVRGEWLVDIAPHYYDLINFPQCEAKRVLEKLYKK
REREREESKNRK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtcagcttgtttgacgttgtggatgagacgtcagtc
accgggaaggtcaccaaattgaacggtggggcggcgatgaacagcaacagcgttggcggc
aacctgagtagtcttgtaaaccggtggaatgggaggccatactcgcagaggtattatgaa
atactggagaagagaaagactctccctgtttggcagcagaaagaggagttcttccaggtt
cttaaggccagccagactataatactggttggtgagactggtagtggtaaaaccactcag
attccccagtttgttttggaagctgtcgatatagaaaccccagataaacgcaggaaatgg
atggttggatgcacacaacctcgcagagtcgctgcaatgtctgtttctcgacgtgttgct
gaagagatggatgtaactattggggaagaggttggttatagcatacgttttgaagactgc
agctgtgctagaactgttttgaagtatctgacagatggtatgctcttgcgagaagcaatg
acagatccacttttggaacgctacaaggtaattattctcgatgaggctcatgaaagaact
ctagctacagatgtactttttggtcttctcaaagaagtgctgaaaaatagacccgatctg
aagctagttgtaatgagtgcaacacttgaggctgagaaatttcaggggtattttaatggt
gcacctcttttgaaggtgcctggtagacttcaccctgtcgagatattttacacttcagaa
cctgaaagggactacctggagtctgccattcggactgtcgtgcagatacatatgtgtgag
cctcctggggatattcttgttttcttaactggagaggaggagatagaagatgcatgccgt
aaaataacaaaagaaattggtaatcttggggatcaggtggggcctgtgaaagttgtgccc
ctttattctactcttcctccagctatgcaacaaaagatatttgaacctgccccacctcca
gtaaaggaagacagtcctcctggaaggaagattgtggtgtcaacaaacattgcggaaact
tcactaaccatagatggaatagtgtatgttattgatcctgggttttctaagcaaaaagtt
tacaatccccgagtccgtgttgaatctttgttggtatctccaatatcaaaggcaagtgca
caccagagaacaggacgtgctggaagaactcaaccaggcaaatgcttcaggctctacaca
gagaggagtttccataatgatcttcagccacagacataccctgaaatattgcgatcaaac
cttgcaaatacagttctgaccttgaagaaactggggatagatgatttggtgcattttgat
tttatggatcctccggctcctgagacattgatgcgagctttggaggtattgaattacttg
ggagcattggatgatgatgggaacctaacaaaattgggtgaaatcatgagtgagtttcct
ttggatccacaaatgtcaaagatgctcgtcgtcagtcctgaattcaactgctcaaatgag
atcctttcaatttctgccatgttatcagtacccaattgctttgtccggcctagggaggct
caaaaagctgcggacgaagcgaaagctaggtttgggcacatcgatggagatcaccttacg
ctcttaaatgtctatcatgcttataagcaaaacaatgaggactcatcttggtgttatgag
aattttatcaatcataggaccatgaaggctgctgataatgttagacaacagctggtacgc
ataatggccaggtttaacctcaaattgtgcagcactgatttcaacagccgtgactactat
gtcaatataaggaaggccatgctagctggctatttcatgcaggtggctcacctggaacgc
actggacactacttgactgttaaagacaatcaagtggtgcacttgcatccttcaaattgc
ctggatcacaagccagagtgggtcatttacaatgagtatgtactgactagtcgaaatttt
atccgcacagtgacagatgttcgtggtgaatggttagttgatatagcaccacactattat
gatttgattaacttcccccagtgtgaggccaagcgtgtacttgagaagctttacaagaag
agggagagggagagagaggaaagcaagaatagaaagtga
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integrated database retrieval system
