Carica papaya (papaya): 110819541
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Entry
110819541 CDS
T05151
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110819541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpap03041
]
110819541
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110819541
Spliceosome [BR:
cpap03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110819541
Complex B
110819541
Complex C
U2 SnRNP specific factors
110819541
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110819541
NCBI-ProteinID:
XP_021904477
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYSFERSQAPQRLYVPPSSRSHDNYEDTDLDNIDYEENDTGRD
AGNTTDTNENGDSDEIDPLDAFMAGIHEEMKAAPAPKPKEKLERYKDDEEDDPMESFLRA
KKDVGLTLAADALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPLVLDKKKIEPIPALDHT
SIDYEPFNTIFMRRKTRLRKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT
LLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDNEKLPWLLERLPG
MIDDGDVLVFASKKATVDEIESQLSQKGFKIGALHGDKDQASRMDILQKFKSGIYHVLIA
TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGEL
VNSLIAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGGGGGGGGRGVRGV
DYGLGIGYNPETNNTSVQAVQGRNAAVNSLRTGMMAQFKSNFVAASSNSQSQSLSSSSSA
YLTKKPTLPGFVSAGTIGGDISRTQTTSTFSPAPTSGVKPTCESSVQNSSQQKSEGSRGR
PRERRRPSGWDR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcggaaatttggattcgaagggttcggtatcaaccggcagaccacttatagc
ttcgagcggtctcaagctcctcagcggctatacgtccctccttcgtctcgcagccatgat
aattacgaggacacggacctcgataacatcgattacgaagagaatgatactggcagggac
gctggtaacacaactgacacgaacgaaaatggtgatagtgacgaaattgatcctctggat
gcgttcatggctgggattcacgaggagatgaaagcggcaccggcgccaaagccgaaggag
aagttggagaggtataaggacgacgaggaggacgatccaatggagagctttttgagggcg
aagaaggacgtggggcttacgctggcggctgacgctctccacgcgggatatgattctgac
gaggaggtttacgcggcggcaaaggcggtggatgcgggcatggtggagtacgattctgat
gataatcctttggtacttgataagaagaagatagagcctattccggctctggatcacact
tctatcgactatgagccattcaatacgatttttatgaggagaaagactcgattgcggaag
gcactgacaatgctgagagccacgtatttggtactagatgaggctgatcgaatgtttgac
cttggttttgagccgcaaataaggtccattgttggtcagattaggccagatcgacagact
ttactgttttcagcaacaatgccacggaaagttgaaaagctagcaagggaaatcctcaca
gatccaataagagttacagtgggtgaggtagggatggctaatgaggacattacccaagtt
gttcatgtgattccttctgataatgagaagctgccctggcttcttgagaggcttcctgga
atgattgatgacggtgatgtgttggtgtttgcttctaaaaaggccactgtggatgagatt
gaatcccagctgtctcaaaagggatttaaaattggtgctcttcatggtgacaaagaccag
gcttctcgcatggacattttgcaaaaatttaagtctggcatctaccatgtacttattgcg
actgatgttgctgcacgtggtcttgacatcaagtccattaagtcagtggtgaactttgat
attgcaagagacatggacatgcatgtacatcggattggtagaacaggtcgtgctggggac
aaggatggggttgcatacactcttataactcagaaagaggcacgatttgctggtgaattg
gtcaatagtttgattgctgctgggcagaatgtgtctgtggaactgatggatcttgctatg
aaggatggaagattcaggtccaagcgtgatgcaagaaaaggaggtggtaagaagggcaaa
gggagaggaggcggcggtggcggcggcggcggcggcgggggtcgaggtgtacgtggtgtt
gattatggcctgggtataggatataatccggaaactaataatacttcagttcaggctgtt
caaggtcgaaatgccgctgttaattctctcaggacaggaatgatggcacagttcaagagc
aactttgttgctgcttcgtcgaactcgcaaagtcaaagtttgagtagcagttcaagtgca
tatctgacaaagaagccaacattacctggatttgtatctgctggtacaattggtggtgat
ataagtagaactcagacaactagcacattcagtcctgctcccacgtcaggtgtaaagccc
acttgtgagagttctgtacaaaactccagtcagcagaaatcagagggttctagaggtagg
ccaagagagagacggaggccatctggctgggacagatag
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