KEGG   Carica papaya (papaya): 110819819
Entry
110819819         CDS       T05151                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110819819
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpap03041]
    110819819
Spliceosome [BR:cpap03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110819819
 Complex C
   U5 SnRNP specific factors
    110819819
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_SPT8 ANAPC4_WD40 WD40_MABP1-WDR62_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_Nup120_160 RMC1_N
Other DBs
NCBI-GeneID: 110819819
NCBI-ProteinID: XP_021904823
LinkDB
Position
Unknown
AA seq 342 aa
MEIVQREGENALLAAGPRPMEWSTVPYSAPQAPGSNGKQRTSSLEAPIMLLTGHQSSIYT
MKFNPAGTVVASGSHDKEIFLWNVQGDCKNFMVLKGHKNAVLDLHWTTDGSQIISASPDK
TLRAWDVETGKQIKKMAEHSSFVNACCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP
DKYQITAVSFSDASDKIFTGGMDNDVKVWDLRKGEVTMTLQGHQDMITGMXDGSYLLSNG
MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIWDT
TSRRILYKLPGHTGSVNESVFHPSEPIIGSCSSDKQIYLGEI
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggaaattgttcaaagagagggcgaaaatgctttgcttgcggctggtccaaggccgatg
gaatggtctactgttccttacagtgctcctcaagcacccggttcgaatgggaagcagcgg
acatcaagtttggaagccccaataatgttgctgacaggccatcagagttctatatacaca
atgaagttcaatccagctggaacagtcgttgcatctggatctcatgacaaagaaattttt
ctttggaatgtgcagggtgattgcaaaaacttcatggttctgaaaggccacaagaatgca
gttctagaccttcactggactactgatggctcccagataatatcagccagccctgacaag
actctgagggcatgggatgttgaaacaggaaaacaaattaaaaagatggctgaacactcc
tcatttgtgaatgcttgttgtccttcaaggagaggtccgcctcttgttgttagtggatcc
gatgatgggactgccaaactctgggatatgcgccaaaggggtgcaattcaaacttttccg
gataaatatcaaataacagcagtcagtttctcagatgcatcggataagatcttcacaggt
ggtatggataatgatgttaaagtttgggatttgcgcaaaggtgaggtgaccatgacactt
cagggtcatcaagatatgataacgggcatgnnagatggttcttaccttctttctaatggc
atggactgcaagctgtgcatatgggatatgcgcccatatgcaccacaaaatcgctgtgtt
aaaattttggaaggacaccagcacaacttcgagaagaacttgctaaaatgttcctggtct
cctgatggaagcaaggtcacagctggtagttcggataggatggtttacatatgggataca
acttctcgacgcattctgtataagctccctggccacactggatctgtaaacgagtcagtc
ttccatcctagtgaacccatcattggctcatgcagtagtgacaaacaaatttacctgggg
gagatctga

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