Carica papaya (papaya): 110820832
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Entry
110820832 CDS
T05151
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110820832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110820832
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110820832
mRNA degradation factors
5'-3' decay
Decapping complex
110820832
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_C
Beta-prop_EML_2
EIF3I
Motif
Other DBs
NCBI-GeneID:
110820832
NCBI-ProteinID:
XP_021906124
LinkDB
All DBs
Position
Unknown
AA seq
1395 aa
AA seq
DB search
MASSPGNPNPQSNPPFDMHNFFRPAPNPTQLQPSGSYPTPASSYPPPAGPFLHHHHHNLY
MPPFNNGDMNNPQQQQQQFQQQQEPVANMHQQRSLSFPTPTLNLTSPRSGNNSNSNAGTQ
ILALINNNQHSAVSQDLQHQYPTQLPVTHPLDSLGPLPGGVGLSRVPSCKLPRGRRLVGD
HVVYDLDARLQGEVQPQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRILNIN
TALRSLFRGHTQRVTDMVFFAEDVHLLASVSVEGRIFVWKISEGSKEEDKPQITGKVVTA
VQISGETESARPRVCWHCHKQEILVVGIGKHVLRIDTTKVGKGEMYSADSPLQCHVDKLI
DGIQLVGKHDGEVTDLSMCQWMTSRLVSASVDGTIKIWEDRKAQPLVVLRPHDGHPVNSA
IFLTAPHQPDHIVLITGGPLNREVKIWASASEEGWLLPCDAKSWKCTQILEFKSSAVLRV
EEAFFNQVAALAQAGILLLANAKRNAIYAVHLEYGPFPAATHMDYISEFTVKMPILSFTG
TNYPPDEHVKVYCVQTQAIQQYTLELCQCLPPPSEDVGAEKLDSSISHDMTNAGGVSALD
PSGSKKTELLLASSAPKPSLQISSSEGANAMSSPVSSTSMEAVTSQDFSSLNGEPRPALP
MGSCDAESVAAPPHPLSLSPRLSRNHSGFLTPTKSFDPAPLPSDNNRNQSAGDYSVDRQM
DTIKRNLSDVHTLGDVSRNNEIKVASGDESGIHNLTMAFKHPTHLITPSEILMAVSSTET
STIIEGKNDGNANIQDVIESSGVGNNAEVEVKVVGEARSVQNNEFPFHGGCKNLVSENRE
KVFCSQASDLGLGVARECFEVSEESYIPHEGHQVDAIGETEPHFQPSLTGDEGGHDSRKD
ASAKVPDSTAITTLQQSPAPSTKGKKHKGKNSQGSGLSSPSSSIFNSADSYNEPGRSLGL
PCSESFAPQIFAMQEMLNQLMTTQKEMQKQISSVVNLPVAKEGRRLEAALGRSIEKAVKA
NADALWARFQEENGKNEKLLRDRTQQITNLISNFMNKDLTPMFEKAVKKEFTAIGPAILR
TITPAIEKTVSSAVAESFQRGLGDKAVNQLDKSVNSKLEASVARQIQAQFQISGKQALQD
ALKSGLEVSIVPAFDVSCKAMFEQVDATFQKGMVEHTNAVWQHFETTHSPLTLALRDAIN
SASSMAQTLSGELADGQRKLLAVATAGTNTTSMNSMATQLGNGPFVGLNEKVETPLDPTK
ELSRLISEHKYDKAFTIALQRSDVSIVSWLCSQVDLHGILAAVPLPLSQGVFLSLLQQLA
CDISKDTSRKLAWMTDVAAAINPADQMIAVHVRPIFEQVNQILHHQQSSPTITGGDILSI
RLLMHVINSMLMSCK
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcctggaaacccgaatccacaatcaaacccgccttttgacatgcacaac
ttcttcagacccgcaccaaacccgacccaattgcaaccctctggttcttaccctacaccc
gcttcctcttatcctccacccgccggtccgttccttcaccaccaccatcataatctttac
atgccgcctttcaacaatggcgatatgaacaatcctcagcagcagcagcagcagtttcag
cagcaacaagagcccgtcgctaacatgcaccagcagcgatcactctcatttccgactccc
actctcaatctcacctctcctcgcagcggcaacaacagcaattccaatgccggtacccaa
atcctggctctcatcaataacaaccaacacagtgccgtcagtcaggatttgcagcatcag
tacccgacccagttaccagtaactcacccgcttgactcattggggccgttaccaggcggt
gtgggtctttcccgggtgcccagttgcaagcttcctaggggaaggcgcttggtgggggat
catgttgtgtatgatctggacgccaggttacagggagaggtacagcctcagctggaggtc
actccgataacaaaatatgggtcggatcctcagcttgtggtggggcggcaaattgcagtc
aataaggtctatatatgctatgggttgaagggagggaatatccgaattcttaatataaac
actgcattgaggtctctgtttcgcggccatacgcagagggtgacagacatggttttcttt
gctgaagatgttcatcttttggctagtgtgagtgtggaggggcgaatctttgtttggaaa
atttctgaaggttcaaaggaagaagataagccacagataacaggaaaagttgtcactgct
gttcagatatcaggagagacagaatcagcacgtccgcgtgtttgttggcactgtcacaaa
caagaaatattggtggttgggattggaaaacatgttcttaggattgatactacaaaagtt
gggaaaggtgaaatgtattcagcagattcccctcttcaatgtcatgttgacaagctgatt
gatgggattcagcttgttggtaaacatgatggagaagtgactgatttgtcaatgtgccaa
tggatgacctctcgcttagtttctgcttctgtggatggcacgataaagatatgggaagat
cgcaaggcacagccacttgtggtattgagaccacatgatggtcaccctgttaactcagcc
atattcttgacagctccccatcaacccgatcacattgtactaatcacgggaggcccactg
aatcgagaagtcaagatttgggcatcagcaagtgaagaaggctggctgctaccttgtgat
gccaaatcatggaagtgcactcaaatattggagttcaagagctcagctgtacttcgagtt
gaggaggcatttttcaatcaagtcgcagctttagctcaggcagggattctcttgcttgca
aatgctaagcggaatgcaatatatgctgtgcacttggaatatggtccttttccagcagca
acgcacatggattacatatcagaattcactgtcaaaatgcctattttgagttttactggg
acaaattatcctcccgatgaacatgtcaaggtgtattgtgttcagacacaagcaattcag
caatatactttagagttatgccagtgcttaccaccgccatcagaggatgttggtgctgag
aagttagactccagcatctcacatgacatgactaatgctggaggagtgtctgctctggac
ccatctggaagtaaaaaaaccgagttgcttttagctagttcagctcccaagccatcgtta
caaataagtagttctgagggtgcaaatgccatgagttctcctgtaagctctacttctatg
gaagcagttacttctcaagacttttccagtttgaatggtgaaccaagacctgctcttcca
atgggaagttgtgatgctgaatctgttgctgctccacctcaccctctttctttgagtcct
aggttgtccaggaatcattctggttttttaactccaacaaaaagctttgacccagctcct
ctgcccagtgacaataacagaaaccaatcagctggggattattcagttgacaggcaaatg
gataccatcaaacgaaatttgtctgatgtgcataccttgggtgatgtttcaaggaacaat
gagattaaagttgcatctggtgatgaatctggcatacataaccttaccatggcgttcaag
cacccaactcacctaataactccttcagagattttgatggctgtttcatccactgaaact
agtaccatcattgagggcaagaatgatgggaatgcaaatattcaagatgtgattgaaagc
agtggtgtgggtaataatgcagaggtggaggttaaagtagttggtgaagcaagatctgtg
caaaataatgaatttcccttccatggagggtgtaaaaaccttgtttcagaaaacagagaa
aaggtcttttgctcccaggcatcagatcttggccttggggtggctagagagtgttttgaa
gtatctgaggaaagttatatcccacatgagggtcatcaggttgatgccattggtgaaaca
gaaccacatttccaaccttcccttacaggtgatgaaggaggtcatgactccaggaaagat
gcctcggcaaaagttccagattcaacagcaattactacattgcagcaatcaccagcccca
agtacaaaggggaaaaagcataagggtaaaaattcgcaaggttctggactgtcctctcca
tcttcaagcattttcaattctgcagactcctacaatgaaccaggtcgcagtttgggactt
ccttgttcagagtcttttgctccacaaatatttgctatgcaggagatgctaaatcagcta
atgacgacacaaaaagaaatgcaaaagcaaatttcaagtgtagttaacctccctgttgcg
aaagaaggtagaagactagaggcggctctagggcggagcattgagaaagctgtcaaggcc
aatgctgatgctttatgggctcggtttcaagaagagaatggaaaaaatgaaaaattgttg
cgtgaccggacacaacaaataacaaatttgatttctaacttcatgaacaaggacttgact
cccatgtttgagaaggcagttaagaaggaatttactgcaattggaccagctatacttcgc
acaatcactccagctattgaaaaaacagtatcatcagctgttgcagagtccttccagaga
ggacttggtgataaggcagtgaatcaattggacaaatctgttaactcaaaacttgaagct
tctgttgcaaggcaaattcaagcacaatttcaaatttctggcaagcaagctctccaggat
gctcttaaatctggtttagaagtttcaattgtccctgcctttgatgtgtcatgcaaagct
atgtttgagcaagtagatgctacatttcagaaagggatggttgagcatacaaatgctgtt
tggcagcattttgaaaccacacattctccattaacgcttgctctaagggatgccattaat
tctgcttcatcaatggctcaaactttaagtggtgaattggctgatggtcaacgaaaactg
ttggccgttgcaactgctggaacgaatacaacttcaatgaattcaatggctactcaattg
ggaaatgggccttttgttggtctcaatgaaaaggttgagacacctctggatccaacaaaa
gagctatcaagattgatatctgaacacaaatacgacaaagctttcacaattgcattacag
agaagcgatgtttctattgtatcctggttatgttcacaggtggatctgcacggaatactg
gcagcagttcctcttcctttaagccaaggtgtgtttctgtctcttctgcagcagttggct
tgtgatatcagcaaggatacatctagaaagttagcatggatgacagacgtggctgcagcc
ataaaccctgcggaccagatgatagcagtccacgtccggccaatattcgagcaagtgaat
cagatactccatcatcaacagagctcgccaacaataactggtggcgacattttgagcatc
cggcttctcatgcacgtaatcaactcaatgcttatgagttgtaaatga
DBGET
integrated database retrieval system
