Carica papaya (papaya): 110821034
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Entry
110821034 CDS
T05151
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03013
Nucleocytoplasmic transport
cpap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110821034
03015 mRNA surveillance pathway
110821034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110821034
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110821034
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
110821034
NCBI-ProteinID:
XP_021906422
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MAKPSRGRRSPPSASGSGSSSRSRSRSRSRSYSGSDSRSSSRSRSRSLSRSRSPSRSRSR
SRSRSFSSSSSPSRSVSSRSRSPPPQRKSPPGVAKRGRSPPPQSKKASPPPRKVSPIRES
LVLHIDSLSRNVNEGHLKEIFSNFGEVVHVELAMDRAVNLPRGYAYVEFKTRVDAEKAQV
YMDGGQIDGNVVRAKFTLPPRQKVSPPSKPIAAAPRRDGPKTDTVNTDIEKEGSKRQKDA
SPHRKPLVSPRRRSPVARRGGSPRRLLDSPPRRRMDSPVRRRVESPYRRGDTPPRRRPPS
PSKGRSPSSPPRRLRSPVRASPRRIRGSPVRRRSPLPPRRRSPPRRARSPPRRSPLARRR
SRSPIRRPARSRSRSISPRRGRAPPGRRGKSSSYSGSRSPRKQIPRRVSRSRSPRRPLKG
RSSSNSSSSSSPPRKP
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaagccgaggacgtcgctccccgccttccgcgtccggttccggttcctcc
tctcgctctcgttccaggtccaggtcccgctcctactctggttcagattccaggtccagc
tcccgctctcgctcccggtcattatcgcggtccagatcgccctcccgctcacgctctcga
tctcgttccaggtctttctcttcatcttcgtctccctcacgtagcgtcagttctcgcagc
cgtagtcctcctccccagcgaaaaagtcctcctggggtggctaaacgtggtcggtcccct
ccaccacaatctaaaaaggcttctccacccccaaggaaagtttctcctattcgtgagtct
cttgttcttcacatcgactccctcagcaggaatgtcaatgaaggccatttgaaagaaatc
ttcagtaattttggtgaagttgtacatgtggaacttgctatggatcgtgctgttaatctt
ccaagaggatatgcctatgtggagttcaagacaagagtagatgccgaaaaggctcaagtg
tacatggatggtggtcaaattgatgggaatgttgttcgagcaaaatttacactacctcca
aggcagaaggtttctccaccctctaaacctattgcagctgctccaaggagggatggtcca
aagactgatactgtcaatactgacattgagaaagaaggatcaaagcggcagaaggatgct
tctcctcaccgaaaacctttagtttccccaagaaggagatctcctgtagctcgaagaggt
ggatctcctcgaagactgctagattctcctccacgccgacgaatggattctcctgttcgt
cgtcgagtggaatctccttaccgccgtggtgatacacctcctaggagaagaccaccatct
ccatctaaagggcgttcaccatcctctcctccgaggcgactcagatctcctgttagggcc
tctccccgaaggatccgtggtagtcctgttcggagacgttctcctcttcctccaaggcgt
cgttcacctcctaggcgagctcgtagcccacctagaagatctcctcttgctcgtaggcgt
agccgctctcctattcggaggcctgctcgatcacgttcaaggtccatttcaccacggaga
ggccgagcaccacctggacgacgtggcaagtcatcatcctactctggatcacgtagccca
cgcaagcagattccacgaagggtatcgaggagtcgtagtcctagaaggcctttaaaagga
aggagcagcagcaacagcagtagcagtagttcaccaccccgtaaaccttag
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