Carica papaya (papaya): 110821178
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Entry
110821178 CDS
T05151
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110821178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110821178
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110821178
mRNA degradation factors
5'-3' decay
Decapping complex
110821178
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
110821178
NCBI-ProteinID:
XP_021906600
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MTLKAFQKANDGHHSHTHLLILQNLLIYIEHLHIPSSNNSSNNIINTSPVNQFLCQNLLI
LHILLQCRSQHASPNHHSGHLNVPYLAGGPQMASSPNLSPFSSPHLQLAGMHQVSQFGGT
LPQFAPALSVSNRPISQWNRTGIYPGDNSSLLSNMLQQQLPQQQFSHQNGLVPPQLISQM
QPPQHRMHHPVQSSLGHLPGLQSQLFNPHLSPSPPMMSNFDAILGLGDPRDQRPKSAQRN
RQNLRFAQGADTGGLKSDSGWPQFRSKYMTADEIENILRMQLAATHCNDPYVDDYYHQAC
LAKKSAGAKLRHHFCPTHLRDLPSRARANNEPHAFLQVDALGRVPFSSIRRPRPLLEVDP
PNSNFTGNSEQKVSDMPLEQEPMLAARVTIEDGLCLLLDVDDIDRFIQFNQFQDGGNELR
QRRHALLEGLAASLQLVDPLGKNGHTVGLAPQDDLVFLRLVSLPKGRKLLARYLQLLFPG
GELMRIVCMAIFRHLRFLFGVLAADPGAAETTNNLAKVVASCVHGMDLGALSACLAAVVC
SSEQPPLRPVGSSAGDGASLILKSVLDRATELLRATNYNTANMSLWRASFDEIFNLFMKY
CINKFDSVMQSLRSQVPPNLAVELSDAAQAIAREMPIELLRASFPHINEQQKRVLMEFLK
RSMLDSHEAGNGGQMNSELVPS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgactctgaaagcattccagaaagcaaacgatggtcatcacagccatactcatcttctc
atattgcagaacctcctaatatatatagaacatcttcatatcccgagcagcaacaacagc
agcaacaacatcatcaacacttctccagtgaaccaattcttgtgccaaaatcttcttata
cttcatatcctcctccagtgcagatcacagcatgcgtcgccaaatcaccactcaggccac
ctgaatgttccatatcttgctggtggaccgcagatggcatcttccccaaatctgtctccc
ttctctagccctcatcttcaattagcaggcatgcatcaggtgtcgcagtttgggggaacg
ttgcctcagtttgcccctgctctctctgttagtaaccgaccaataagccagtggaatcgg
accggtatttatcctggtgataactccagcctcttgagcaatatgttgcaacaacagtta
cctcaacaacaattctctcatcaaaatggtttggtacctccacagttaatctcacagatg
caaccaccacaacataggatgcaccatccagtccaatcatcactgggccatttaccgggg
ttgcagtcacaactattcaatcctcatctttccccatccccaccgatgatgagcaatttt
gatgcaattcttggtcttggtgatccaagagatcaaaggccaaaatcagctcagagaaat
agacagaatctacgctttgctcaaggtgctgatactggtggccttaagagtgacagtggg
tggccacagtttcgatcaaaatacatgacagctgatgaaattgagaatattctcaggatg
cagctggcagcaactcactgtaatgatccatatgtagatgattattatcatcaggcttgt
cttgcaaaaaaatctgctggggcaaagctgaggcatcacttttgtccaactcacttaagg
gatcttccttcccgtgcacgtgctaataatgaacctcatgctttcctccaggttgatgct
cttggaagggttcctttctcttcaattcgtaggcctcgtccccttctcgaagtggaccct
cctaattcaaattttactggcaactctgagcagaaggtttctgatatgcccctagaacag
gaacctatgcttgcggctagagttaccattgaggatggtttatgtctccttcttgatgta
gatgatatcgatcgttttatacaattcaatcaattccaagatggtggaaatgagttgaga
cagaggcgacatgccttgttggaaggtctggcagcatcactccaactggttgacccacta
ggcaagaatggccacacagtggggcttgctccacaggatgatcttgtgttcttgagatta
gtctcccttcctaaaggcaggaagctccttgcaagataccttcagctgctttttccagga
ggggagcttatgcgaattgtctgcatggccatcttccgtcatttaaggttcttgtttgga
gtacttgctgcagatccaggtgctgcagaaacaactaataatcttgctaaggttgttgca
tcatgtgttcatggaatggatcttggtgcacttagtgcttgtcttgcagcagtcgtttgt
tcctctgagcagcccccacttcgtcctgttgggagctctgccggagatggggcttctctt
atccttaaatccgtgcttgacagggcaacagaactgcttcgtgctacaaactacaacact
gctaatatgtcactttggcgtgcttcatttgacgagatctttaaccttttcatgaagtat
tgcataaacaaatttgatagtgtcatgcaatcattgcgttctcaggttccgccaaattta
gctgttgagttgtcagatgctgcccaagctattgctagggaaatgcctattgaactttta
cgtgcaagttttcctcatattaacgagcagcaaaaaagggtcttgatggaattcttgaag
cgttccatgctcgatagtcatgaagctggcaatggtggtcaaatgaattcagagttggtg
ccgagttga
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