Carica papaya (papaya): 110821356
Help
Entry
110821356 CDS
T05151
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110821356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110821356
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110821356
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
110821356
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
HGTP_anticodon
Motif
Other DBs
NCBI-GeneID:
110821356
NCBI-ProteinID:
XP_021906851
LinkDB
All DBs
Position
Unknown
AA seq
329 aa
AA seq
DB search
MRKLQVSLSLSQTQKIRLDKALEKLQSCTTNPNASVIVADSIPVNYEDAFLKGLGTADHN
GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIVVGRVLEIAQKRWRLEINFNQDAVLM
LSSMNLPDGIQRRRTALDELNMRNIFEENDVVCAEVRNVHNDGSLQLQARSRKYGKLEKG
QLLKVDPYLVKKSKQHFHHLEQYGVDLILGCNGYIWVGEHVEVRDSMVEDQISDVERQKI
TANKNSTSLEEQELIYTPLEMRQNICRIANAIRVLSNLGFTLIVEVIMDTVNASNTKNIE
IHDMLGSEFHVVVAEREADRRISLTKRKK
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagttacaggtctcgttgtcgttgagtcaaacgcagaagatacgactggacaaa
gctctcgagaagctccagtcctgcaccaccaaccccaacgcatccgtcatcgttgccgat
tccatccctgtcaactacgaagatgccttcctcaaaggacttggaactgctgaccacaac
ggtgaagtggtggctacagtctgtggagtagtagagcgtgtgaacaagctcgtttatgta
cgggccttacgagccaggtacaagcctgaggttggagatatcgtggtaggacgggttctg
gagattgctcaaaagcgatggagactggagattaatttcaaccaggatgcagttttgatg
ctttcttcgatgaacttgccagatggtatccagaggcggcgaactgctctagatgaactc
aacatgcgcaatatttttgaagagaatgatgttgtgtgtgctgaagttcgtaatgtccac
aatgatggcagcttgcagctccaagcaagaagtcgaaaatatggaaagcttgagaagggt
cagttgctaaaggttgatccttatctagtgaagaaaagcaagcaacatttccatcatctc
gagcaatatggagttgaccttatacttggatgcaatggatatatatgggtcggtgaacat
gtggaagttagagatagtatggtggaggatcaaatcagtgacgttgaacgtcagaagatc
acagcaaacaaaaattctactagtcttgaggaacaagagctaatatataccccactagag
atgagacagaacatatgcagaattgcaaatgctatccgagtgctatctaacttagggttt
acgttgattgttgaagtgataatggacacagttaatgcgagcaacacaaagaatattgaa
atacacgacatgcttggatcagagttccatgtcgtagttgcagagagagaggctgatcgg
agaatctcattgacaaagagaaaaaagtga
DBGET
integrated database retrieval system
